failed test on CI/CD

Author: LCrossman

microBioRust/new_output.gbk

@@ -361,3 +361,107 @@ ORIGIN
   841 GATTTTTACG TCAACGCCGG CAGGAACAAC GACCGGTGCT TTAGCAACAC GAGACA
 
 //
+LOCUS       LOCUS       source_1source_1                          910910 bp    DNA     linear CON  bp    DNA     linear CON 04-JUN-202504-JUN-2025
+
+DEFINITION  DEFINITION  Escherichia coliEscherichia coli  K-12 substr. MG1655K-12 substr. MG1655.
+.
+ACCESSION   ACCESSION   source_1source_1
+
+KEYWORDS    .
+KEYWORDS    .
+SOURCE      SOURCE      Escherichia coliEscherichia coli  K-12 substr. MG1655K-12 substr. MG1655
+
+  ORGANISM    ORGANISM  Escherichia coliEscherichia coli  K-12 substr. MG1655K-12 substr. MG1655
+
+FEATURES             Location/Qualifiers
+FEATURES             Location/Qualifiers
+     source          1..     source          1..910910
+
+                     /organism="                     /organism="K-12 substr. MG1655K-12 substr. MG1655"
+"
+                     /mol_type="                     /mol_type="DNADNA"
+"
+                     /strain="                     /strain="K-12 substr. MG1655K-12 substr. MG1655"
+"
+                     /type_material="                     /type_material="type strain of Escherichia coli K12type strain of Escherichia coli K12"
+"
+                     /db_xref="                     /db_xref="PRJNA57779PRJNA57779"
+"
+     gene            complement(     gene            complement(11....354354)
+)
+                     /locus_tag="                     /locus_tag="b3304b3304"
+"
+     CDS             complement(     CDS             complement(11....354354)
+)
+                     /locus_tag="                     /locus_tag="b3304b3304"
+"
+                     /codon_start="                     /codon_start="11"
+"
+                     /gene="                     /gene="rplRrplR"
+"
+                     /translation="MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGS
+                     LVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQAL
+                     DAAREAGLQ"                     /translation="MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGS
+                     LVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQAL
+                     DAAREAGLQ"
+
+                     /product="                     /product="50S ribosomal subunit protein L1850S ribosomal subunit protein L18"
+"
+     gene            complement(     gene            complement(364364....897897)
+)
+                     /locus_tag="                     /locus_tag="b3305b3305"
+"
+     CDS             complement(     CDS             complement(364364....897897)
+)
+                     /locus_tag="                     /locus_tag="b3305b3305"
+"
+                     /codon_start="                     /codon_start="11"
+"
+                     /gene="                     /gene="rplFrplF"
+"
+                     /translation="MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKH
+                     NTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVINLS
+                     GFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYAD
+                     VVRTKEAKK"                     /translation="MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKH
+                     NTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVINLS
+                     GFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYAD
+                     VVRTKEAKK"
+
+                     /product="                     /product="50S ribosomal subunit protein L650S ribosomal subunit protein L6"
+"
+ORIGIN
+ORIGIN
+    1 TTAGAACTGA AGGCCAGCTT CACGGGCAGC ATCTGCCAGT GCCTGGACAC GACCATGATA
+   61 TTGGAACCCG GAACGGTCAA AGGATACATC TTTGATGCCT TTTTCCAGAG CGCGTTCAGC
+  121 GACAGCTTTA CCCACAGCTG CAGCCGCGTC TTTGTTACCG GTGTACTTCA GTTGTTCAGC
+  181 GATAGCTTTT TCTACAGTAG AAGCAGCTAC CAGAACTTCA GAACCGTTCG GTGCAATTAC
+  241 CTGTGCGTAA ATGTGACGCG GGGTACGATG TACCACCAGG CGAGTTGCGC CCAGCTCCTG
+  301 GAGCTTGCGG CGTGCGCGGG TCGCACGACG GATACGAGCA GATTTCTTAT CCATAGTGTT
+  361 ACCTTACTTC TTCTTAGCCT CTTTGGTACG CACGACTTCG TCGGCGTAAC GAACACCCTT
+  421 GCCTTTATAA GGCTCAGGAC GACGGTAGGC GCGCAGATCC GCTGCAACCT GGCCGATCAC
+  481 CTGCTTATCA GCGCCTTTCA GCACGATTTC AGTCTGAGTC GGACATTCAG CAGTGATACC
+  541 CGCAGGCAGC TGATGGTCAA CAGGATGAGA GAAACCCAGA GACAGGTTAA TCACATTGCC
+  601 TTTAACCGCT GCACGGTAAC CTACACCAAC CAGCTGCAGC TTCTTAGTGA AGCCTTCGGT
+  661 AACACCGATA ACCATTGAGT TCAGCAGGGC ACGCGCGGTA CCAGCCTGTG CCCAACCGTC
+  721 TGCGTAACCA TCACGCGGAC CGAAGGTCAG GGTATTATCT GCATGTTTAA CTTCAACAGC
+  781 ATCGTTGAGA GTACGAGTCA GCTCGCCGTT TTTACCTTTG ATCGTAATAA CCTGACCGTT
+  841 GATTTTTACG TCAACGCCGG CAGGAACAAC GACCGGTGCT TTAGCAACAC GAGACA
+    1 TTAGAACTGA AGGCCAGCTT CACGGGCAGC ATCTGCCAGT GCCTGGACAC GACCATGATA
+   61 TTGGAACCCG GAACGGTCAA AGGATACATC TTTGATGCCT TTTTCCAGAG CGCGTTCAGC
+  121 GACAGCTTTA CCCACAGCTG CAGCCGCGTC TTTGTTACCG GTGTACTTCA GTTGTTCAGC
+  181 GATAGCTTTT TCTACAGTAG AAGCAGCTAC CAGAACTTCA GAACCGTTCG GTGCAATTAC
+  241 CTGTGCGTAA ATGTGACGCG GGGTACGATG TACCACCAGG CGAGTTGCGC CCAGCTCCTG
+  301 GAGCTTGCGG CGTGCGCGGG TCGCACGACG GATACGAGCA GATTTCTTAT CCATAGTGTT
+  361 ACCTTACTTC TTCTTAGCCT CTTTGGTACG CACGACTTCG TCGGCGTAAC GAACACCCTT
+  421 GCCTTTATAA GGCTCAGGAC GACGGTAGGC GCGCAGATCC GCTGCAACCT GGCCGATCAC
+  481 CTGCTTATCA GCGCCTTTCA GCACGATTTC AGTCTGAGTC GGACATTCAG CAGTGATACC
+  541 CGCAGGCAGC TGATGGTCAA CAGGATGAGA GAAACCCAGA GACAGGTTAA TCACATTGCC
+  601 TTTAACCGCT GCACGGTAAC CTACACCAAC CAGCTGCAGC TTCTTAGTGA AGCCTTCGGT
+  661 AACACCGATA ACCATTGAGT TCAGCAGGGC ACGCGCGGTA CCAGCCTGTG CCCAACCGTC
+  721 TGCGTAACCA TCACGCGGAC CGAAGGTCAG GGTATTATCT GCATGTTTAA CTTCAACAGC
+  781 ATCGTTGAGA GTACGAGTCA GCTCGCCGTT TTTACCTTTG ATCGTAATAA CCTGACCGTT
+  841 GATTTTTACG TCAACGCCGG CAGGAACAAC GACCGGTGCT TTAGCAACAC GAGACA
+
+
+//
+//

microBioRust/test_output.gff

@@ -145,6 +145,55 @@ GATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACA-
 ##FASTA
 >test_output.gff
 
+TTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGTGCCTGGACACGACCATGATA
+TTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGC
+GACAGCTTTACCCACAGCTGCAGCCGCGTCTTTGTTACCGGTGTACTTCAGTTGTTCAGC
+GATAGCTTTTTCTACAGTAGAAGCAGCTACCAGAACTTCAGAACCGTTCGGTGCAATTAC
+CTGTGCGTAAATGTGACGCGGGGTACGATGTACCACCAGGCGAGTTGCGCCCAGCTCCTG
+GAGCTTGCGGCGTGCGCGGGTCGCACGACGGATACGAGCAGATTTCTTATCCATAGTGTT
+ACCTTACTTCTTCTTAGCCTCTTTGGTACGCACGACTTCGTCGGCGTAACGAACACCCTT
+GCCTTTATAAGGCTCAGGACGACGGTAGGCGCGCAGATCCGCTGCAACCTGGCCGATCAC
+CTGCTTATCAGCGCCTTTCAGCACGATTTCAGTCTGAGTCGGACATTCAGCAGTGATACC
+CGCAGGCAGCTGATGGTCAACAGGATGAGAGAAACCCAGAGACAGGTTAATCACATTGCC
+TTTAACCGCTGCACGGTAACCTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGT
+AACACCGATAACCATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTC
+TGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGC
+ATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTT
+GATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACA
+##sequence-region	source_source_1_1	1	910
+source_source_1_1	.	CDS	1	354	0	-	0	id=b3304;name=source_source_1_1;gene=rplR;locus_tag=b3304;product=50S ribosomal subunit protein L18
+source_source_1_1	.	CDS	364	897	0	-	0	id=b3305;name=source_source_1_1;gene=rplF;locus_tag=b3305;product=50S ribosomal subunit protein L6
+##FASTA
+>test_output.gff
+
+TTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGTGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCCGCGTCTTTGTTACCGGTGTACTTCAGTTGTTCAGCGATAGCTTTTTCTACAGTAGAAGCAGCTACCAGAACTTCAGAACCGTTCGGTGCAATTACCTGTGCGTAAATGTGACGCGGGGTACGATGTACCACCAGGCGAGTTGCGCCCAGCTCCTGGAGCTTGCGGCGTGCGCGGGTCGCACGACGGATACGAGCAGATTTCTTATCCATAGTGTTACCTTACTTCTTCTTAGCCTCTTTGGTACGCACGACTTCGTCGGCGTAACGAACACCCTTGCCTTTATAAGGCTCAGGACGACGGTAGGCGCGCAGATCCGCTGCAACCTGGCCGATCACCTGCTTATCAGCGCCTTTCAGCACGATTTCAGTCTGAGTCGGACATTCAGCAGTGATACCCGCAGGCAGCTGATGGTCAACAGGATGAGAGAAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACCTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATAACCATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACA
+##sequence-region	source_1	1	910
+##sequence-region	source_1	1	910
+source_1	.source_1		CDS.		1CDS	354	0		1-		354	00		id=b3304;name=source_1;gene=rplR;locus_tag=b3304;product=50S ribosomal subunit protein L18
+-	0	id=b3304;name=source_1;gene=rplR;locus_tag=b3304;product=50S ribosomal subunit protein L18source_1	.
+	CDSsource_1	364		.897		CDS0	364	-	897		00		-id=b3305;name=source_1;gene=rplF;locus_tag=b3305;product=50S ribosomal subunit protein L6	0	
+##FASTA
+id=b3305;name=source_1;gene=rplF;locus_tag=b3305;product=50S ribosomal subunit protein L6
+>##FASTA
+>test_output.gff
+
+TTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGTGCCTGGACACGACCATGATA
+TTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGC
+GACAGCTTTACCCACAGCTGCAGCCGCGTCTTTGTTACCGGTGTACTTCAGTTGTTCAGC
+GATAGCTTTTTCTACAGTAGAAGCAGCTACCAGAACTTCAGAACCGTTCGGTGCAATTAC
+CTGTGCGTAAATGTGACGCGGGGTACGATGTACCACCAGGCGAGTTGCGCCCAGCTCCTG
+GAGCTTGCGGCGTGCGCGGGTCGCACGACGGATACGAGCAGATTTCTTATCCATAGTGTT
+ACCTTACTTCTTCTTAGCCTCTTTGGTACGCACGACTTCGTCGGCGTAACGAACACCCTT
+GCCTTTATAAGGCTCAGGACGACGGTAGGCGCGCAGATCCGCTGCAACCTGGCCGATCAC
+CTGCTTATCAGCGCCTTTCAGCACGATTTCAGTCTGAGTCGGACATTCAGCAGTGATACC
+CGCAGGCAGCTGATGGTCAACAGGATGAGAGAAACCCAGAGACAGGTTAATCACATTGCC
+TTTAACCGCTGCACGGTAACCTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGT
+AACACCGATAACCATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTC
+TGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGC
+ATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTT
+GATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACAtest_output.gff
+
+
 TTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGTGCCTGGACACGACCATGATA
 TTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGC
 GACAGCTTTACCCACAGCTGCAGCCGCGTCTTTGTTACCGGTGTACTTCAGTTGTTCAGC