Merge pull request #38 from LUMC/release_1.10.1

rhpvorderman · web-flow · commit 0d652311f9c4 · 2025-02-03T14:35:48.000+01:00
Release 1.10.1
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,3 +1,7 @@
+version 1.10.1
+------------------
++ Fix a bug that is caused by a wrong bash variable.
+
 version 1.10.0
 ------------------
 + Fix crashing baseline when only unproductive sequences are present.
diff --git a/shm_csr.xml b/shm_csr.xml
@@ -1,4 +1,4 @@
-<tool id="shm_csr" name="SHM &amp; CSR pipeline" version="1.10.0" profile="16.04">
+<tool id="shm_csr" name="SHM &amp; CSR pipeline" version="1.10.1" profile="16.04">
 	<description></description>
 	<requirements>
 		<requirement type="package" version="3.7.1">python</requirement>
diff --git a/wrapper.sh b/wrapper.sh
@@ -837,7 +837,7 @@ mv $log $outdir/log.html
 echo "<html><center><h1><a href='index.html'>Click here for the results</a></h1>Tip: Open it in a new tab (middle mouse button or right mouse button -> 'open in new tab' on the link above)<br />" > $log
 echo "<table border = 1>" >> $log
 echo "<thead><tr><th>Info</th><th>Sequences</th><th>Percentage</th></tr></thead>" >> $log
-tIFS="$TMP"
+tIFS="$IFS"
 IFS=$'\t'
 while read step seq perc
 	do

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-<tool id="shm_csr" name="SHM & CSR pipeline" version="1.10.0" profile="16.04">`
	`1`	`+<tool id="shm_csr" name="SHM & CSR pipeline" version="1.10.1" profile="16.04">`
`2`	`2`	`<description></description>`
`3`	`3`	`<requirements>`
`4`	`4`	`<requirement type="package" version="3.7.1">python</requirement>`