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\documentclass[11pt]{article}
% Match Word's default text area (6.5" x 9")
\usepackage[letterpaper, top=1in, bottom=1in, left=1in, right=1in]{geometry}
\usepackage{hyperref}
\usepackage{etaremune}
\usepackage{natbib}
\usepackage{url}
\usepackage{enumitem}
\setlist[itemize]{noitemsep, topsep=0pt}
\usepackage{parskip} % Adds spacing between paragraphs, no indent
\linespread{1.3} % Slightly increase line spacing
\usepackage[none]{hyphenat}
\usepackage{array}
\usepackage{tabularx}
\setlength{\parindent}{0pt} % removes default indent
\usepackage{longtable}
\usepackage{ltablex}
\keepXColumns
\renewcommand{\refname}{Publications} % for citations
\renewcommand{\arraystretch}{1.3} % or 1.3 for more space between rows in tables
\usepackage[utf8]{inputenc} % For pdflatex
\usepackage[T5]{fontenc} % For Vietnamese support
\begin{document}
% Centered header
\begin{center}
{\LARGE \textbf{Jay-Terrence Lennon}}\\[0.5em]
Department of Biology, Indiana University, Bloomington, Indiana 47405, USA \\
%Phone: (812) 856-0962 \\
Email: \href{mailto:lennonj@iu.edu}{lennonj@iu.edu} \\
Lab website: \url{https://lennonlab.github.io} \\
%Lab wiki: \url{https://lennon.bio.indiana.edu} \\
Google Scholar: \url{https://goo.gl/qx4hHR}
\end{center}
\vspace{-1em}
\section*{Education}
\noindent
\begin{tabular}{@{}l@{\hspace{3em}}l@{\hspace{3em}}l@{\hspace{3em}}l@{}}
1995 & B.S. & Environmental Forest Biology & SUNY-ESF at Syracuse \\
1999 & M.A. & Ecology and Evolutionary Biology & University of Kansas \\
2004 & Ph.D. & Ecology and Evolutionary Biology & Dartmouth College \\
\end{tabular}
\section*{Professional experience}
\vspace{-1.25em} % Adjust this value as needed
\noindent
\begin{tabularx}{\textwidth}{@{}l@{\hspace{2em}}X@{}}
2025--2028 & Chair, Applied and Environmental Microbiology Scientific Unit, American Society for Microbiology (ASM) \\
2023 & Visiting Professor, Goethe University, Frankfurt, Germany \\
2023 & Short-term Visiting Professor, ETH Zürich, Centre for Origin and Prevalence of Life \\
2020--2024 & Faculty, Complex Networks and Systems, Indiana University \\
2018--2022 & Faculty, Microbial Diversity Course, Marine Biological Laboratory, Woods Hole \\
2016-- & Professor, Indiana University, Department of Biology; Core Faculty in Evolution, Ecology, and Behavior; Affiliated Faculty in Microbiology \\
2016--2017 & Whitman Center Associate, Marine Biological Laboratory, Woods Hole \\
2016--2017 & Visiting Professor, Montana State University, Department of Microbiology and Immunology \\
2012--2016 & Associate Professor, Indiana University, Department of Biology; Core Faculty in Evolution, Ecology, and Behavior; Affiliated Faculty in Microbiology \\
2012--2015 & Adjunct Professor, W.K. Kellogg Biological Station, Michigan State University \\
2012 & Associate Professor, W.K. Kellogg Biological Station, Department of Microbiology and Molecular Genetics, Michigan State University \\
2011--2016 & Ad hoc Graduate Faculty, Michigan Technological University \\
2008--2012 & Adjunct Professor, Plant Biology Department, Michigan State University \\
2006--2012 & Assistant Professor, W.K. Kellogg Biological Station, Department of Microbiology and Molecular Genetics, Michigan State University \\
2004--2006 & Postdoctoral Research Associate, Brown University, Department of Ecology and Evolutionary Biology \\
\end{tabularx}
\vspace{-1.5em}
\section*{Honors and awards}
\vspace{-1.25em} % Adjust this value as needed
\noindent
\begin{tabularx}{\textwidth}{@{}l@{\hspace{2em}}X@{}}
2024 & Highly Cited Author, American Society for Microbiology (ASM) \\
2024 & Soil Stars, Applied Microbiology International (AMI) \\
2023 & Humboldt Prize, Alexander von Humboldt Foundation \\
2022--2025 & Governing Board, Ecological Society of America (ESA) \\
2022--2027 & Chair, Climate Change Task Force, American Academy of Microbiology (AAM) \\
2021 & Fellow, Ecological Society of America (ESA) \\
2020--2022 & Distinguished Lecturer, American Society for Microbiology (ASMDL) \\
2020--2026 & Governor, American Academy of Microbiology (AAM) \\
2019 & Fellow, American Academy of Microbiology (AAM) \\
2019--2024 & Highly Cited Researcher, Clarivate, Cross-Field \\
2018 & Fellow, American Association for the Advancement of Science (AAAS) \\
2012 & Kavli Fellow, National Academy of Sciences \\
2004 & USDA National Research Initiative (NRI) Postdoctoral Fellowship Award \\
2004 & Hannah T. Croasdale Graduate Scholar Award, Dartmouth College \\
2004 & Milton L. Shifman Endowed Scholarship, Marine Biological Laboratory \\
2004 & Albert Cass Fellowship, The Rockefeller University \\
2004 & Nathan Jenks Biology Award, Dartmouth College \\
2003 & Best student presentation, North American Lake Management Society National Meeting, Mashantucket, CT \\
2002 & NSF Doctoral Dissertation Improvement Grant (DDIG) \\
1999--2004 & Dartmouth Fellowship, Dartmouth College \\
1995 & Undergraduate honors: \textit{Magna Cum Laude}; President’s List; Alpha Sigma Xi, SUNY-ESF \\
1992 & Outstanding history student, SUNY Oswego \\
\end{tabularx}
\vspace{-1.5em}
\section*{Publications}
\vspace{-0.25em} % Adjust this value as needed
\begin{etaremune}
\item[] \textnormal{\underline{Preprints, In Review, and In Press:}}
\item Karakoç C, Shoemaker WR, Lennon JT (2025) Evolutionary bioenergetics of sporulation. \textit{bioRxiv} doi:10.1101/2025.08.26.672491. \href{https://www.biorxiv.org/content/10.1101/2025.08.26.672491v1}{(link)}
\item Mueller EA, van der Elst L, Gumennik A, Lennon JT (2025) The Enterostat: a 3D-printed bioreactor for simulating gut microbiome dynamics. \textit{bioRxiv} doi:10.1101/2025.08.21.671663. \href{https://www.biorxiv.org/content/10.1101/2025.08.21.671663v1}{(link)}
\item Lennon JT, Bittleston LS, Chen Q, Cooper VS, Fernández J, Gilbert JA, Häggblom MM, Harper LV, Jansson JK, Jiao N, Kuurstra EM, Peixoto RS, Rappuoli R, Schembri MA, Ventosa A, Vullo DL, Zhang C, Nguyen NK (2025) Microbes without borders: uniting societies for climate action.
%\textit{To be published in:}
\begin{itemize}
\item \textit{mBio} doi.org/10.1128/mbio.02136-25
\item \textit{Sustainable Microbiology}
\item \textit{ISMEJ}
\item \textit{FEMS Microbiology Ecology}
\item \textit{Ocean-Land-Atmosphere Research}
\item \textit{Microbiology Australia}
\end{itemize}
\item{Gilbert JA, Scholz AH, Dominguez-Bello MG, Korsten L, Berg G ; Singh B; Boetius, A, Wang F; Greening C, Wrighton K, Bordenstein S, Jansson JK, Lennon JT, Souza V, Allard Sarah, Thomas T, Cowan D, Crowther T, Nguyen N, Harper L, Haraoui, L-P, Ishaq S, Mcfall-Ngai M, Redford K, Peixoto RS (2025) Safeguarding Microbial Biodiversity: Microbial Conservation Specialist Group (MCSG) within the Species Survival Commission of the International Union for Conservation of Nature (IUCN) In press at \textit{Sustainable Microbiology}}
\item Janet K. Jansson, Avi I. Flamholz, Raquel Peixoto, Salles JF, Lennon JT, Rosado A, Sanders IR, Jacobsen CS, Makhalanyane T, Schadt C, Gilbert JA (2025) Heterotrophic respiration by soil microbes in a changing climate. In review at \textit{Nature Reviews Earth \& Environment}
\item Wang J, Hu A, Cui Y, Bercovici S, Lu X, Lennon JT, Soininen J, Liu Y, Jiao N (2025) Towards the chemogeography of dissolved organic matter in the global ocean. In review at \textit{Environmental Science \& Technology}
\item Gilbert JA, Peixoto RS, Scholz AH, Dominguez-Bello MG, Korsten L, Berg G, Singh B, Boetius A, Wang F, Greening C, Jansson J, Lennon JT, Souza V, Thomas T, Cowan D, Crowhter T, Nguyen N, Harper L, Haraoui LP, Ishaq SL, Redford K (2025) The IUCN Microbial Conservation Specialist Group (MCSG): A global framework for safeguarding microbial biodiversity. \textit{Nature Microbiology} doi:10.1038/s41564-025-02113-5 \href{https://lennonlab.github.io/assets/publications/Gilbert_etal_2025.pdf}{(pdf)}
\item Overcast I, Calderon-Sanou I, Creer S, Dominguez-Garcia V, Hagen O, Hickerson MI, Jörger Hickfang T, Krehenwinkel H, Lennon JT, Méndez L, Méndez M, Onstein R, Pereira H, Qin C, Winter M, Yu DW, Zurell D, Gillespie RG (2025) The distribution of genetic diversity in ecological communities: A unifying measure for monitoring biodiversity change. \textit{EcoEvoRxiv}. doi:10.32942/X2Z64W. \href{https://ecoevorxiv.org/repository/view/9169/}{(link)} In review at \textit{Conservation Letters})
\item Wang J, Hu A, Cui Y, Bercovici SK, Lennon JT, Soininen J, Liu Y, Jiao N (2025) Geographical patterns and drivers of dissolved organic matter in the global ocean. \textit{Research Square}. doi:10.21203/rs.3.rs-6624570/v1. \href{https://assets-eu.researchsquare.com/files/rs-6624570/v1/a75822e6-0649-4c95-919e-3ba016f0bc96.pdf?c=1747022553}{(link)}
\item Bogar G, Lennon JT, Vander Stel H, Evans SE (2025) Simple, rapid, and sensitive assay for the quantification of total polysaccharides to estimate extracellular polymeric substances (EPS) in soil. \textit{bioRxiv} doi:10.1101/2025.05.22.654594. \href{https://www.biorxiv.org/content/10.1101/2025.05.22.654594v1}{(link)} In review at \textit{Journal of Microbiological Methods}
\item Măgălie A, Marantos A, Schwartz DA, Marchi J, Lennon JT, Weitz JS (2024) Phage infection fronts trigger early sporulation and collective defense in bacterial populations. \textit{bioRxiv}. doi:10.1101/2024.05.22.595388. \href{https://www.biorxiv.org/content/10.1101/2024.05.22.595388v1.full.pdf}{(link)} In revision at \textit{ISMEJ}
\item Hill CA, McMullen JC, Lennon JT (2024) Nitrogen enrichment alters selection on rhizobial genes. \textit{bioRxiv}. doi:10.1101/2024.11.25.625319. \href{https://www.biorxiv.org/content/10.1101/2024.11.25.625319v1.full.pdf}{(link)} In revision at \textit{mSystems}
\item Hu A, Cui Y, Bercovici A, Tanentzap AJ, Lennon JT, Lin X, Yang Y, Liu Y, Osterholz H, Dong H, Lu Y, Jiao N, Wang J (2024) Photochemical processes drive thermal responses of dissolved organic matter in the dark ocean. \textit{bioRxiv}. doi:10.1101/2024.09.06.611638. \href{https://www.biorxiv.org/content/10.1101/2024.09.06.611638v1.full.pdf}{(link)} In revision at \textit{Nature Communications}
\item McGill B, Jarzyna M, Diaz R, Barnes C, Diaz FH, Economo E, French C, Hagen O, James H, Kivlin S, Lahiri S, Lennon JT, Mascarenhas R, Ohyama L, Rabosky DL, Zhu K, Hickerson M, Gillespie R (In review) A call to develop a coherent discipline of biodiversity science to address global change.
\vspace{1em}
\item[] \textnormal{\underline{Patents:}}
\item Lennon JT, van der Elst LA, Mueller EA, Gumennik A (2023) Gut bioreactor and method for making the same. US Patent 11,840,681 B2. \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2023b.pdf}{(pdf)}
\vspace{1em}
\item[] \textnormal{\underline{White papers:}}
\item Rappuoli R, Nguyen N, Bloom DE, Brooks CG, Egamberdieva D, Lawley TD, Morhard R, Mukhopadhyay A, Lennon JT, Peixoto RS, Silver PA, Stein LY (2025) Microbial solutions for climate change — Toward an economically resilient future. \textit{American Society for Microbiology}. \href{https://lennonlab.github.io/assets/publications/Rappuoli_etal_2025b.pdf}{(pdf)}
\item Lennon JT and 32 others (2025) Colloquium report: Water, waterborne
pathogens and public health: environmental drivers. American Society for Microbiology, Washington, DC. \href{https://asm.org/reports/water-waterborne-pathogens-and-public-health-envi}{(link)}
\item Lennon JT and 28 others (2023) Colloquium report: Microbes in models: integrating microbes into earth system models for understanding climate change. American Society for Microbiology, Washington, DC. \href{https://www.ncbi.nlm.nih.gov/books/NBK592518/}{(link)}
\item Lennon JT and 28 others (2023) Colloquium report: The role of microbes in mediating methane emissions. American Society for Microbiology, Washington, DC. \href{https://pubmed.ncbi.nlm.nih.gov/38194471/}{(link)}
\vspace{1em}
\item[] \textnormal{\underline{Commentaries and essays:}}
\item Gilbert JA, Peixoto RS, Scholz AH, Dominguez-Bello MG, Korsten L, Berg G, Singh B, Boetius A, Wang F, Greening C, Jansson J, Lennon JT, Souza V, Thomas T, Cowan D, Crowhter T, Nguyen N, Harper L, Haraoui LP, Ishaq SL, Redford K (2025) The IUCN Microbial Conservation Specialist Group (MCSG): A global framework for safeguarding microbial biodiversity. In press at \textit{Nature Microbiology} doi:10.1038/s41564-025-02113-5. \href{https://www.nature.com/articles/s41564-025-02113-5}{(link)}
\item Lennon JT, Rappuoli R, Bloom DE, Brooks CG, Egamberdieva D, Lawley TD, Morhard R, Mukhopadhyay A, Nguyen N, Peixoto RS, Silver PA, Stein LY (2025) Microbial solutions for climate change require global partnership. \textit{mBio} 16: 10.1128/mbio.00778-25. \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2025a.pdf}{(pdf)}
\item Rappuoli R, Nguyen N, Bloom DE, Brooks CG, Egamberdieva D, Lawley TD, Morhard R, Mukhopadhyay A, Lennon JT, Peixoto RS, Silver PA, Stein LY (2025) Microbes can capture carbon and degrade plastic — why aren’t we using them more? \textit{Nature} 639: 864–866. \href{https://lennonlab.github.io/assets/publications/Rappuoli_etal_2025a.pdf}{(pdf)}
\item Peixoto R, Voolstra CR, Stein LY, Hugenholtz P, Salles JF, Amin SA, Häggblom M, Gregory A, Makhalanyane TP, Wang F, Agbodjato NA, Wang Y, Jiao N, Lennon JT, Ventosa A, Bavoil PM, Miller V, Gilbert JA (2024) Microbiology at the brink: a unified call for action against climate catastrophe.
\textit{Published in:}
\begin{itemize}
\item Nature Microbiology 9: 3084–3085 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024a.pdf}{(pdf)}
\item Nature Communications 15: 9637 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024b.pdf}{(pdf)}
\item Nature Reviews Microbiology 23: 1–2 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024c.pdf}{(pdf)}
\item Nature Reviews Earth and Environment 6: 4–5 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024d.pdf}{(pdf)}
\item ISMEJ 18: wrae219 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024e.pdf}{(pdf)}
\item mSystems 11: e0141624 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024f.pdf}{(pdf)}
\item Communications Biology 7: 1466 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024g.pdf}{(pdf)}
\item Communications Earth and Environment 5: 672 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024h.pdf}{(pdf)}
\item FEMS Microbiology Ecology 100: fiae144 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024i.pdf}{(pdf)}
\item NPJ Biodiversity 3: 34 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024j.pdf}{(pdf)}
\item NPJ Biofilms and Microbiomes 10: 122 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024k.pdf}{(pdf)}
\item NPJ Sustainable Agriculture 2: 23 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024l.pdf}{(pdf)}
\item NPJ Climate Action 3: 1–3 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024m.pdf}{(pdf)}
\item Sustainable Microbiology 1: qvae029 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024n.pdf}{(pdf)}
\end{itemize}
\item Beattie GA, Cotrufo FM, Crowther TW, Edlund A, Salles JF, Gilbert JK, Jansson JK, Jensen PR, Lennon JT, Makhalanyane T, Martiny JBH, Newman DK, Stevenson M (2024) Soil microbial strategies for climate mitigation: Report from a climate action workshop in Las Vegas, Nevada, February 2024. \textit{Sustainable Microbiology} 1: qvae033. \href{https://lennonlab.github.io/assets/publications/Beattie_etal_2024.pdf}{(pdf)}
\item Lennon JT (2020) Microbial life underfoot. \textit{mBio} 11: e03201-19. \href{https://lennonlab.github.io/assets/publications/Lennon_2020.pdf}{[pdf]}
\item Lennon JT, Locey KJ (2018) There are more microbial species on Earth than stars in the galaxy. \textit{Aeon}. \href{https://aeon.co/ideas/there-are-more-microbial-species-on-earth-than-stars-in-the-sky}{(link)}
\item Lau JA, Lennon JT, Heath KD (2017) Trees harness the power of microbes to survive climate change. \textit{Proceedings of the National Academy of Sciences of the United States of America} 114: 11009–11011. \href{https://lennonlab.github.io/assets/publications/Lau_etal_2017.pdf}{(pdf)}
\vspace{1em}
\item[] \textnormal{\underline{Book reviews:}}
\item Wisnoski NI, Lennon JT (2016) Book Review. Principles of Microbial Diversity by James W. Brown. \textit{Quarterly Review of Biology} 91: 98–99. \href{https://lennonlab.github.io/assets/publications/Wisnoski_Lennon_2016.pdf}{(pdf)}
\item Moger-Reischer RZ, Lennon JT (2017) Book Review. \textit{The human superorganism: how the microbiome is revolutionizing the pursuit of a healthy life} by Rodney Dietert. \textit{Quarterly Review of Biology} 92: 203. \href{https://lennonlab.github.io/assets/publications/Moger-Reicher_Lennon_2017.pdf}{(pdf)}
\vspace{1em}
\item[] \textnormal{\underline{Theses:}}
\item Lennon JT (2004) The energetic importance of terrestrial carbon in lake ecosystems. Dartmouth College, 169 pp. \href{https://lennonlab.github.io/assets/publications/Lennon_2004_Thesis.pdf}{(pdf)}
\item Lennon JT (1999) Invasion success of the exotic \textit{Daphnia lumholtzi}: species traits and community resistance. University of Kansas, 77 pp.
\vspace{1em}
\item[] \textnormal{\underline{Peer-reviewed papers:}}
\item Lennon JT, Lehmkuhl BK, Chen L, Illingworth M, Kuo V, Muscarella ME (2025) \\Resuscitation-promoting factor (Rpf) terminates dormancy among diverse soil bacteria.\\
\textit{mSystems} 10: 10.1128/msystems.01517-24. \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2025b.pdf}{(pdf)}
\item Mueller EA, Lennon JT (2025) Residence time structures microbial communities through niche partitioning. \textit{Ecology Letters} 28: e70093. \href{https://lennonlab.github.io/assets/publications/Mueller_Lennon_2025.pdf}{(pdf)}
\item Nevermann HD, Gros C, Lennon JT (2025) A game of life with dormancy. \textit{Proceedings of the Royal Society B} 292: 20242543. \href{https://lennonlab.github.io/assets/publications/Nevermann_etal_2025.pdf}{(pdf)}
\item Zang Z, Zhang C, Park KJ, Schwartz DA, Podicheti R, Lennon JT, Gerdt JP (2025) Streptomyces secretes a siderophore that sensitizes competitor bacteria to phage infection. \textit{Nature Microbiology}. \href{https://lennonlab.github.io/assets/publications/Zang_etal_2025.pdf}{(pdf)}
\item Beattie GA, Edlund A, Esiobu N, Gilbert J, Nicolaisen MH, Jansson JK, Jensen P, Keiluwei M, Lennon JT, Martiny JBH, Minnisi VR, Newmann D, Peixoto R, Schadt C, van der Meer JR (2025) Soil microbiome interventions for carbon sequestration and climate mitigation. \textit{mSystems}. \href{https://lennonlab.github.io/assets/publications/Beattie_etal_2025.pdf}{(pdf)}
\item Webster KD, Lennon JT (2025) Dormancy in the origin, evolution, and persistence of life on Earth. \textit{Proceedings of the Royal Society B: Biological Sciences} 292: 20242035. \href{https://lennonlab.github.io/assets/publications/Webster_Lennon_2025.pdf}{(pdf)}
\item Waldrop MP, Ernakovich JG, Vishnivetskaya TA, Schaefer SR, Mackleprang R, Bara J, O'Brien JM, Winkel M, Barbato RA, Heffernan L, Leewis MC, Hewitt RE, Hultman J, Sun Y, Biasi C, Bradley JA, Liebner S, Ricketts MP, Muscarella ME, Schütte U, Abuah F, Whalen E, Timling I, Voight C, Taş N, Lloyd KG, Silganen HMP, Rivkina EM, Voříšková J, Tao J, Liang R, Lennon JT, Onstott TC (2025) Microbial ecology of permafrost soils: populations, processes, and perspectives. \textit{Permafrost and Periglacial Processes}. \href{https://lennonlab.github.io/assets/publications/Waldrop_etal_2025.pdf}{(pdf)}
\item Wu W, Hsieh C, Logares R, Lennon JT, Liu H (2024) Ecological processes shaping highly connected bacterial communities along strong environmental gradients. \textit{FEMS Microbiology Ecology} 100: fiae146. \href{https://lennonlab.github.io/assets/publications/Wu_etal_2024.pdf}{(pdf)}
\item Hu A, Jang KS, Tanentzap AJ, Zhao W, Lennon JT, Liu J, Li M, Stegen JC, Choi M, Lu Y, Feng X, Wang J (2024) Thermal responses of dissolved organic matter under global change. \textit{Nature Communications} 15: 576. \href{https://lennonlab.github.io/assets/publications/Hu_etal_2024.pdf}{(pdf)}
\item Lennon JT, Abramoff RZ, Allison SD, Burckhardt RM, DeAngelis KM, Dunne JP, Frey SD, Friedlingstein P, Hawkes CV, Hungate BA, Khurana S, Kivlin SN, Levine N, Manzoni S, Martiny AC, Martiny JBH, Nguyen N, Rawat M, Talmy D, Todd-Browne K, Vogt M, Wieder WR, Zakem E (2024) Priorities, opportunities, and challenges for integrating microorganisms into Earth system models for climate change prediction. \textit{mBio} 15: e00455-24. \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2024.pdf}{(pdf)}
\item Moger-Reischer RZ, Glass JI, Wise KS, Sun L, Bittencourt DMC, Lehmkuhl BK, Schoolmaster DR Jr, Lynch M, Lennon JT (2023) Evolution of a minimal cell. \textit{Nature} 620: 122--127. \href{https://lennonlab.github.io/assets/publications/Moger-Reischer_etal_2023.pdf}{(pdf)}
\item Schwartz DA, Shoemaker WR, Măgăliee A, Weitz JS, Lennon JT (2023) Bacteria-phage coevolution with a seed bank. \textit{ISMEJ} 17: 1315–1325. \href{https://lennonlab.github.io/assets/publications/Schwartz_etal_2023b.pdf}{(pdf)}
\item Fishman FJ, Lennon JT (2023) Macroevolutionary constraints on global microbial diversity. \textit{Ecology and Evolution} 13: e10403. \href{https://lennonlab.github.io/assets/publications/Fishman_Lennon_2023.pdf}{(pdf)}
\item Zhou X, Lennon JT, Lu X, Ruan A (2023) Anthropogenic activities mediate stratification and stability of microbial communities in freshwater sediments. \textit{Microbiome} 11: 191. \href{https://lennonlab.github.io/assets/publications/Zhou_etal_2023.pdf}{(pdf)}
\item Schwartz DA, Rodriguez-Ramos J, Shaffer M, Flynn F, Daly R, Wrighton KC, Lennon JT (2023) Human-gut phages harbor sporulation genes. \textit{mBio} e0018223. \href{https://lennonlab.github.io/assets/publications/Schwartz_etal_2023a.pdf}{(pdf)}
\item Wisnoski NI, Lennon JT (2023) Scaling up and down: movement ecology for microorganisms. \textit{Trends in Microbiology} 31: 242–253. \href{https://lennonlab.github.io/assets/publications/Wisnoski_Lennon_2023.pdf}{(pdf)}
\item Măgălie A, Schwartz DA, Lennon JT, Weitz JS (2023) Optimal dormancy strategies in fluctuating environments given delays in phenotypic switching. \textit{Journal of Theoretical Biology} 561: 111413. \href{https://lennonlab.github.io/assets/publications/Magalie_etal_2023.pdf}{(pdf)}
\item Lennon JT, Frost SDW, Nguyen NK, Peralta AL, Place AR, Treseder KK (2023) Microbiology and climate change: a transdisciplinary imperative. \textit{mBio} 13: e0335-22. \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2023.pdf}{(pdf)}
\item Bolin LG, Lennon JT, Lau JA (2023) Traits of soil bacteria predict plant responses to soil moisture. \textit{Ecology} 104: e3893. \href{https://lennonlab.github.io/assets/publications/Bolin_etal_2023.pdf}{(pdf)}
\item Irvine R, Houser M, Marquart-Pyatt ST, Bolin L, Browning EG, Dott G, Evans SE, Howard M, Lau J, Lennon JT (2023) Soil health through farmers’ eyes: Toward a better understanding of how farmers view, value, and manage for healthier soils. \textit{Journal of Soil and Water Conservation} 78: 82–92. \href{https://lennonlab.github.io/assets/publications/Irvine_etal_2023.pdf}{(pdf)}
\item McMullen JG, Lennon JT (2023) Mark-recapture of microorganisms.\textit{Environmental \\ Microbiology} 25: 150–157. \href{https://lennonlab.github.io/assets/publications/McMullen_Lennon_2023.pdf}{(pdf)}
\item Webster KD, Schimmelmann A, Drobniak A, Mastalerz M, Lagarde LR, Boston PJ, Lennon JT (2022) Diversity and composition of cave methanotrophic communities. \textit{Microbiology Spectrum} 10: e0156621. \href{https://lennonlab.github.io/assets/publications/Webster_etal_2022.pdf}{(pdf)}
\item Schwartz DA, Lekmkuhl BK, Lennon JT (2022) Phage-encoded sigma factors alter bacterial dormancy. \textit{mSphere} e00927-22. \href{https://lennonlab.github.io/assets/publications/Schwartz_etal_2022.pdf}{(pdf)}
\item Shoemaker WR, Polezhaeva E, Givens KB, Lennon JT (2022) Seed banks alter the molecular evolutionary dynamics of \textit{Bacillus subtilis}. \textit{Genetics} 221: iyac071. \href{https://lennonlab.github.io/assets/publications/Shoemaker_etal_2022.pdf}{(pdf)}
\item Hu A, Choi M, Tanentzap AJ, Liu J, Jang KS, Lennon JT, Liu Y, Soininen J, Lu X, Zhang Y, Shen J, Wang J (2022) Ecological networks of dissolved organic matter and microorganisms under global change. \textit{Nature Communications} 13: 3699. \href{https://lennonlab.github.io/assets/publications/Hu_etal_2022a.pdf}{(pdf)}
\item Hu A, Jang KS, Meng F, Stegen J, Tanentzap AJ, Choi M, Lennon JT, Soinenen J, Wang J (2022) Microbial and environmental processes shape the link between organic matter functional traits and composition. \textit{Environmental Science and Technology} 56: 10504-10516. \href{https://lennonlab.github.io/assets/publications/Hu_etal_2022b.pdf}{(pdf)}
\item Krause SMB, Bertilsson S, Grossart HP, Bodelier PLE, van Bodegom P, Lennon JT, Philippot L, Le Roux X (2022) Microbial trait-based approaches for agroecosystems. \textit{Advances in Agronomy} 175: 260–299. \href{https://lennonlab.github.io/assets/publications/Krause_etal_2022.pdf}{(pdf)}
\item Shoemaker WR Lennon JT (2022) Predicting parallelism and quantifying divergence in experimental evolution. \textit{mSphere} 7: e00672-21. \href{https://lennonlab.github.io/assets/publications/Shoemaker_Lennon_2022.pdf}{(pdf)}
\item Shoemaker WR Jones SE Muscarella ME Behringer MG Lehmkuhl BK Lennon JT (2021) Microbial population dynamics and evolutionary outcomes under extreme energy-limitation. \textit{Proceedings of the National Academy of Sciences of the United States of America} 118: e2101691118. \href{https://lennonlab.github.io/assets/publications/Shoemaker_etal_2021b.pdf}{(pdf}, \href{https://lennonlab.github.io/assets/publications/Rillig_etal_2021.pdf}{commentary}, \href{https://lennonlab.github.io/assets/publications/Shoemaker_etal_2021b_Suppl.pdf}{supplement)}
\item Lennon JT den Hollander F Wilke-Berenguer M Blath J (2021) Principles of seed banks: complexity emerging from dormancy. \textit{Nature Communications} 2: 4807. \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2021a.pdf}{(pdf)}
\item Wisnoski NI Lennon JT (2021) Stabilising role of seed banks and the maintenance of bacterial diversity. \textit{Ecology Letters} 24: 2328–2338. \href{https://lennonlab.github.io/assets/publications/Wisnoski_Lennon_2021.pdf}{(pdf}, \href{https://lennonlab.github.io/assets/publications/Wisnoski_Lennon_2021_Suppl.pdf}{supplement)}
\item Shoemaker WR Polezhaeva E Givens KB Lennon JT (2021) Molecular evolutionary dynamics of energy limited microorganisms. \textit{Molecular Biology and Evolution} 38: msab195. \href{https://lennonlab.github.io/assets/publications/Shoemaker_etal_2021a.pdf}{(pdf}, \href{https://lennonlab.github.io/assets/publications/Shoemaker_etal_2021a_Suppl.zip}{supplement)}
\item Lamit LJ, Romanowicz KJ, Potvin LR, Lennon JT, Tringe SG, Chimner RA, Kolka RK, Kane ES, Lilleskov EA (2021) Peatland microbial community responses to plant functional group and drought are depth-dependent. \textit{Molecular Ecology} 30: 5119–5136. \href{https://lennonlab.github.io/assets/publications/Lamit_etal_2021.pdf}{[pdf]}
\item Kuo V, Lehmkuhl BK, Lennon JT (2021) Resuscitation of the microbial seed bank alters plant-soil interactions. \textit{Molecular Ecology} 30: 2905–2914. \href{https://lennonlab.github.io/assets/publications/Kuo_etal_2021.pdf}{[pdf]}
\item Wisnoski NI, Lennon JT (2020) Microbial community assembly in a multi-layer dendritic metacommunity. \textit{Oecologia} 195: 13–24. \href{https://lennonlab.github.io/assets/publications/Wisnoski_Lennon_2020.pdf}{[pdf]}
\item Mobilian C, Wisnoski NI, Lennon JT, Abler M, Widney S, Craft CB (2020) Differential effects of press vs. pulse seawater intrusion on microbial communities of a tidal freshwater marsh. \textit{Limnology and Oceanography Letters} 8: 154–161. \href{https://lennonlab.github.io/assets/publications/Mobilian_etal_2020.pdf}{[pdf]}
\item Muscarella ME, Howey XM, Lennon JT (2020) Trait-based approach to bacterial growth efficiency. \textit{Environmental Microbiology} 22: 3494–3504. \href{https://lennonlab.github.io/assets/publications/Muscarella_etal_2020.pdf}{[pdf]}
\item Moger-Reischer RZ, Snider EZ, McKenzie KL, Lennon JT (2020) Low costs of adaptation to dietary restriction. \textit{Biology Letters} 16: 20200008. \href{https://lennonlab.github.io/assets/publications/Moger-Reischer_etal_2020.pdf}{[pdf]}
\item Locey KJ, Muscarella ME, Larsen ML, Bray SR, Jones SE, Lennon JT (2020) Dormancy dampens the microbial distance-decay relationship. \textit{Philosophical Transactions of the Royal Society B} 375: 20190243. \href{https://lennonlab.github.io/assets/publications/Locey_etal_2020.pdf}{[pdf]}
\item Lennon JT, Locey KJ (2020) More evidence for Earth's massive microbiome. \textit{Biology Direct} 15: 5. \href{https://lennonlab.github.io/assets/publications/Lennon_Locey_2020.pdf}{[pdf]}
\item Wisnoski NI, Muscarella ME, Larsen ML, Peralta AP, Lennon JT (2020) Metabolic insight into bacterial community assembly across ecosystem boundaries. \textit{Ecology} 101: e02968. \href{https://lennonlab.github.io/assets/publications/Wisnoski_etal_2020.pdf}{[pdf]}
\item Yin Y, Masalerz M, Lennon JT, Drobniak A, Schimmelmann A (2020) Characterization and microbial mitigation of fugitive methane emissions from oil and gas wells: Example from Indiana, USA. \textit{Applied Geochemistry} 118: 104619. \href{https://lennonlab.github.io/assets/publications/Yin_etal_2020.pdf}{(pdf)}
\item Mueller EA, Wisnoski NI, Peralta AL, Lennon JT (2019) Microbial rescue effects: how microbiomes can save hosts from extinction. \textit{Functional Ecology} 34: 2055--2064. \href{https://lennonlab.github.io/assets/publications/Mueller_etal_2019.pdf}{(pdf)}
\item Moger-Reischer RZ, Lennon JT (2019) Microbial aging and longevity. \textit{Nature Reviews Microbiology} 17: 79--690. \href{https://lennonlab.github.io/assets/publications/Moger-Reischer_Lennon_2019.pdf}{(pdf)}
\item Wisnoski NI, Leibold MA, Lennon JT (2019) Dormancy in metacommunities. \textit{American Naturalist} 194: 131--151. \href{https://lennonlab.github.io/assets/publications/Wisnoski_etal_2019.pdf}{(pdf)}
\item Salazar A, Lennon JT, Dukes JS (2019) Microbial activity improves predictability of soil respiration dynamics. \textit{Biogeochemistry} 144: 103--116. \href{https://lennonlab.github.io/assets/publications/Salazar_etal_2019.pdf}{(pdf)}
\item Muscarella ME, Boot CM, Broeckling CD, Lennon JT (2019) Resource diversity structures aquatic bacterial communities. \textit{ISMEJ} 13: 2183--2195. \href{https://lennonlab.github.io/assets/publications/Muscarella_etal_2019.pdf}{(pdf)}
\item Larsen ML, Wilhelm SW, Lennon JT (2019) Nutrient stoichiometry shapes microbial coevolution. \textit{Ecology Letters} 22: 1009--1018. \href{https://lennonlab.github.io/assets/publications/Larsen_etal_2019.pdf}{(pdf)}
\item Locey KJ, Lennon JT (2019) A residence-time framework for biodiversity. \textit{American Naturalist} 194: 59--72. \href{https://lennonlab.github.io/assets/publications/Locey_Lennon_2019.pdf}{(pdf)}
\item Sprunger CD, Culman SW, Peralta AP, DuPont ST, Lennon JT, Snapp SS (2019) Perennial grain crop roots and nitrogen management shape soil food webs and soil carbon dynamics. \textit{Soil Biology and Biochemistry} 137: 107573. \href{https://lennonlab.github.io/assets/publications/Sprunger_etal_2019.pdf}{(pdf)}
\item Shade A, Dunn RR, Blowes SA, Keil P, Bohannan BMJ, Hermann M, Küsel K, Lennon JT, Sanders NJ, Storch D, Chase J (2018) Macroecology to unite all biodiversity great and small. \textit{Trends in Ecology and Evolution} 33: 731--744. \href{https://lennonlab.github.io/assets/publications/Shade_etal_2018.pdf}{(pdf)}
\item Lennon JT, Muscarella ME, Placella SA, Lehmkuhl BK (2018) How, when, and where relic DNA biases estimates of microbial diversity. \textit{mBio} 9: e00637-18. \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2018.pdf}{(pdf)}
\item Shoemaker WR, Lennon JT (2018) Evolution with a seed bank: the population genetic consequences of microbial dormancy. \textit{Evolutionary Applications} 11: 60–75. \href{https://lennonlab.github.io/assets/publications/Shoemaker_Lennon_2018.pdf}{(pdf)}
\item Hall EK, Bernhardt ES, Bier R, Bradford MA, Boot CM, Cotner JB, del Giorgio PA, Evans SE, Graham EB, Jones SE, Lennon JT, Nemergut D, Osborne B, Rocca JD, Schimel JS, Waldrop MS, Wallenstein MW (2018) Understanding how microbiomes influence the systems they inhabit. \textit{Nature Microbiology} 3: 977–982. \href{https://lennonlab.github.io/assets/publications/Hall_etal_2018.pdf}{(pdf)}
\item Peralta AL, Sun Y, McDaniel MD, Lennon JT (2018) Crop diversity increases disease suppressive capacity of soil microbiomes. \textit{Ecosphere} 9: e02235. \href{https://lennonlab.github.io/assets/publications/Peralta_etal_2018.pdf}{(pdf)}
\item Long H, Sung W, Kucukyildirim S, Williams E, Miller S, Guo W, Patterson C, Gregory C, Strauss C, Stone C, Berne C, Kysela D, Shoemaker WR, Muscarella M, Luo H, Lennon JT, Brun YV, Lynch M (2018) Evolutionary determinants of genome-wide nucleotide composition. \textit{Nature Ecology and Evolution} 2: 237--240. \href{https://lennonlab.github.io/assets/publications/Long_etal_2018.pdf}{(pdf)}
\item Schimmelmann A, Streil T, Fernandez-Cortes A, Cuezva S, Lennon JT (2018) Radiolysis via radioactivity is not responsible for rapid methane oxidation in subterranean air. \textit{PLOS ONE} 113: 020650. \href{https://lennonlab.github.io/assets/publications/Schimmelmann_etal_2018.pdf}{(pdf)}
\item Shoemaker WR, Locey KJ, Lennon JT (2017) A macroecological theory of microbial biodiversity. \textit{Nature Ecology and Evolution} 1: 0107. \href{https://lennonlab.github.io/assets/publications/Shoemaker_etal_2017.pdf}{(pdf)}
\item Kuo V, Shoemaker WR, Muscarella ME, Lennon JT (2017) Whole genome sequence of the soil bacterium \textit{Micrococcus} sp. KBS0714. \textit{Genome Announcements} 5: e00697-17. \href{https://lennonlab.github.io/assets/publications/Kuo_etal_2017.pdf}{(pdf)}
\item Nguyễn-Thuỳ D, Schimmelmann A, Nguyễn-Văn H, Drobniak A, Lennon JT, Tạ PH, Nguyễn NTA (2017) Subterranean microbial oxidation of atmospheric methane in cavernous tropical karst. \textit{Chemical Geology} 466: 229--238. \href{https://lennonlab.github.io/assets/publications/Nguyen-Thuy_etal_2017.pdf}{(pdf)}
\item Lamit LJ, Romanowicz JH, Potvin LR, Rivers A, Singh K, Lennon JT, Tringe S, Kane E, Lilleskov E (2017) Patterns and drivers of fungal community depth stratification in \textit{Sphagnum} peat. \textit{FEMS Microbiology Ecology} 93: fix082. \href{https://lennonlab.github.io/assets/publications/Lamit_etal_2017.pdf}{(pdf)}
\item Locey KJ, Fisk MC, Lennon JT (2017) Microscale insight into microbial seed banks. \textit{Frontiers in Microbiology} 7: 2040. \href{https://lennonlab.github.io/assets/publications/Locey_etal_2017.pdf}{(pdf)}
\item Webster KD, Lagarde LR, Sauer PE, Schimmelmann A, Lennon JT, Boston PJ (2017) Isotopic evidence for the migration of thermogenic methane in Cueva de Villa Luz cave, Tabasco, Mexico. \textit{Journal of Cave and Karst Studies} 79: 24–34. \href{https://lennonlab.github.io/assets/publications/Webster_etal_2017.pdf}{(pdf)}
\item Lennon JT, Locey KJ (2017) Macroecology for microbiology. \textit{Environmental Microbiology Reports} 9: 38–40. \href{https://lennonlab.github.io/assets/publications/Lennon_Locey_2017.pdf}{(pdf)}
\item LaSarre B, McCully AL, Lennon JT, McKinlay JB (2017) Microbial mutualism dynamics governed by dose-dependent toxicity and growth-independent production of a cross-fed nutrient. \textit{ISMEJ} 11: 337–348. \href{https://lennonlab.github.io/assets/publications/LaSarre_etal_2017.pdf}{(pdf)}
\item Lennon JT, Nguyễn Thùy D, Phạm \DJ{}ức N, Drobniak A, Tạ PH, Phạm N\DJ{}, Streil T, Webster KD, Schimmelmann A (2017) Microbial contributions to subterranean methane sinks. \textit{Geobiology} 15: 254--258. \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2017.pdf}{(pdf)}
\item Skelton J, Geyer KM, Lennon JT, Creed RP, Brown BL (2017) Multi-scale ecological filters shape crayfish microbiome assembly. \textit{Symbiosis} 72: 159–170. \href{https://lennonlab.github.io/assets/publications/Skelton_etal_2017.pdf}{(pdf)}
\item Locey KJ, Lennon JT (2017) A modeling platform for the simultaneous emergence of ecological patterns. \textit{PeerJ Preprints} 5: e1469v3. \href{https://lennonlab.github.io/assets/publications/Locey_Lennon_2017.pdf}{(pdf)}
\item Locey KJ, Lennon JT (2016) Powerful predictions of biodiversity from ecological models and scaling laws. \textit{Proceedings of the National Academy of Sciences of the United States of America} 113: E5097. \href{https://lennonlab.github.io/assets/publications/Locey_Lennon_2016_Reply.pdf}{(pdf)}
\item Lennon JT, Locey KJ (2016) The underestimation of global microbial diversity. \textit{mBio} 7: e01298-16. \href{https://lennonlab.github.io/assets/publications/Lennon_Locey_2016_mBio.pdf}{(pdf)}
\item Locey KJ, Lennon JT (2016) Scaling laws predict global microbial diversity. \textit{Proceedings of the National Academy of Sciences of the United States of America} 113: 5970–5975. \href{https://lennonlab.github.io/assets/publications/Locey_Lennon_2016.pdf}{(pdf}, \href{https://lennonlab.github.io/assets/publications/Locey_Lennon_2016_SI.pdf}{supplement}, \href{https://lennonlab.github.io/assets/publications/Pedros-Alio_Manrubia_2016.pdf}{commentary}, \href{https://f1000.com/prime/726327633}{F1000 recommendation)}
\item Lennon JT, Lehmkuhl BK (2016) A trait-based approach to biofilms in soil. \textit{Environmental Microbiology} 18: 2732–2742. \href{https://lennonlab.github.io/assets/publications/Lennon_Lehmkuhl_2016.pdf}{(pdf)}
\item Muscarella ME, Jones SE, Lennon JT (2016) Species sorting along a subsidy gradient alters community stability. \textit{Ecology} 97: 2034–2043. \href{https://lennonlab.github.io/assets/publications/Muscarella_etal_2016.pdf}{(pdf}, \href{https://lennonlab.github.io/assets/publications/Muscarella_etal_Supplement_2016.pdf}{supplement)}
\item Aanderud ZT, Vert JC, Magnusson TW, Lennon JT, Breakwell DP, Harker AR (2016) Bacterial dormancy is more prevalent in freshwater than hypersaline lakes. \textit{Frontiers in Microbiology} 7: 853. \href{https://lennonlab.github.io/assets/publications/Aanderud_etal_2016.pdf}{(pdf)}
\item Lennon JT, Denef VJ (2016) Evolutionary ecology of microorganisms: from the tamed to the wild. In: Yates MV, Nakatsu C, Miller R, Pillai S (eds). \textit{Manual of Environmental Microbiology, 4th ed.} ASM Press, Washington, DC, pp. 4.1.2-1–4.1.2-12. \href{https://lennonlab.github.io/assets/publications/Lennon_Denef_2015.pdf}{(pdf)}
\item Wigington CH, Sonderegger DL, Brussard CPD, Buchan A, Finke JF, Fuhrman JA, Lennon JT, Middelboe M, Stock CA, Suttle CA, Wilson WH, Wommack EK, Wilhelm SW, Weitz JS (2016) Re-examining the relationship between virus and microbial cell abundances in the global oceans. \textit{Nature Microbiology} 1: 15024. \href{https://lennonlab.github.io/assets/publications/Wiggington_etal_2016.pdf}{(pdf)}
\item Hall EK, Schoolmaster DR, Amado AM, Stets EG, Lennon JT, Domine L, Cotner JB (2016) Scaling relationships among drivers of aquatic respiration: from the smallest to the largest freshwater ecosystems. \textit{Inland Waters} 6: 1–10. \href{https://lennonlab.github.io/assets/publications/Hall_etal_2016.pdf}{(pdf)}
\item Kinsman-Costello LE, Hamilton SK, O'Brien J, Lennon JT (2016) Phosphorus release from the drying and reflooding of diverse wetland sediments. \textit{Biogeochemistry} 130: 159–176. \href{https://lennonlab.github.io/assets/publications/Kinsman-Costello_etal_2016.pdf}{(pdf)}
\item Martiny JBH, Jones SE, Lennon JT, Martiny AC (2015) Microbiomes in light of traits: a phylogenetic perspective. \textit{Science} 350: aac9323. \href{https://lennonlab.github.io/assets/publications/Martiny_etal_2015.pdf}{(pdf)}
\item Bier RL, Bernhardt ES, Boot CM, Graham EB, Hall EK, Lennon JT, Nemergut D, Osborne BB, Ruiz-Gonzalez C, Schimel JP, Waldrop MP, Wallenstein MD (2015) Linking microbial community structure and microbial processes: an empirical and conceptual overview. \textit{FEMS Microbiology Ecology} 91: fiv113. \href{https://lennonlab.github.io/assets/publications/Bier_etal_2015.pdf}{(pdf)}
\item Shoemaker WR, Muscarella ME, Lennon JT (2015) Genome sequence of the soil bacterium \textit{Janthinobacterium} sp. KBS0711. \textit{Genome Announcements} 3: e00689-15. \href{https://lennonlab.github.io/assets/publications/Shoemaker_etal_2015.pdf}{(pdf)}
\item Treseder KK, Lennon JT (2015) Fungal traits that drive ecosystem dynamics. \textit{Microbiology and Molecular Biology Reviews} 79: 243–262. \href{https://lennonlab.github.io/assets/publications/Treseder_Lennon_2015.pdf}{(pdf)}
\item Solomon CT, Jones SE, Weidel BC, Buffam I, Fork ML, Karlsson J, Larsen S, Lennon JT, Read JS, Sadro S, Saros JE (2015) Ecosystem consequences of changing inputs of terrestrial dissolved organic matter to lakes: current knowledge and future challenges. \textit{Ecosystems} 18: 376–389. \href{https://lennonlab.github.io/assets/publications/Solomon_etal_2015.pdf}{(pdf)}
\item Weitz JS, Stock CA, Wilhelm SW, Bourouiba L, Buchan A, Coleman ML, Follows MJ, Fuhrman JA, Jover LF, Lennon JT, Middelboe M, Sonderegger DL, Suttle CA, Taylor BP, Thingstad TF, Wilson WH, Wommack EK (2015) A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes. \textit{The ISME Journal} 9: 1352–1364. \href{https://lennonlab.github.io/assets/publications/Weitz_etal_2015.pdf}{(pdf)}
\item Aanderud ZT, Jones SE, Fierer N, Lennon JT (2015) Resuscitation of the rare biosphere contributes to pulses of ecosystem activity. \textit{Frontiers in Microbiology} 6: 24. \href{https://lennonlab.github.io/assets/publications/Aanderud_etal_2015.pdf}{(pdf)}
\item Jones SE, Lennon JT (2015) A test of the subsidy-stability hypothesis: effects of terrestrial carbon in aquatic ecosystems. \textit{Ecology} 96: 1550–1560. \href{https://lennonlab.github.io/assets/publications/Jones_Lennon_2015.pdf}{(pdf}, \href{https://esapubs.org/archive/ecol/E096/138/}{supplement}, \\ \href{https://lennonlab.github.io/assets/publications/Jones_Lennon_2016_ESABulletin.pdf}{ESA Bulletin Photo Gallery)}
\item Rocca JD, Hall EK, Lennon JT, Evans SE, Waldrop MP, Cotner JB, Nemergut DR, Graham EB, Wallenstein MD (2015) Relationships between protein-encoding gene abundance and corresponding process are commonly assumed yet rarely observed. \textit{The ISME Journal} 9: 1693–1699. \href{https://lennonlab.github.io/assets/publications/Rocca_etal_2015.pdf}{(pdf)}
\item Muscarella ME, Bird KC, Larsen ML, Placella SA, Lennon JT (2014) Phosphorus resource heterogeneity in microbial food webs. \textit{Aquatic Microbial Ecology} 73: 259–272. \href{https://lennonlab.github.io/assets/publications/Muscarella_etal_2014.pdf}{(pdf)}
\item Peralta AL, Stuart D, Kent AD, Lennon JT (2014) A social-ecological framework for \\ "micromanaging" microbial services. \textit{Frontiers in Ecology and the Environment} 12: 524–531. \href{https://lennonlab.github.io/assets/publications/Peralta_etal_2014.pdf}{(pdf}, \href{https://lennonlab.github.io/assets/publications/Peralta_etal_2014_Suppl.pdf}{supplement}, \href{https://lennonlab.github.io/assets/publications/Peralta_etal_2014_Cover.pdf}{cover)}
\item Krause S, Le Roux X, Niklaus PA, Van Bodegom P, Lennon JT, Bertilsson S, Grossart HP, Philippot L, Bodelier P (2014) Trait-based approaches for understanding microbial biodiversity and ecosystem functioning. \textit{Frontiers in Microbiology} 5: 251. \href{https://lennonlab.github.io/assets/publications/Krause_etal_2014.pdf}{(pdf)}
\item terHorst CP, Lennon JT, Lau JA (2014) The relative importance of rapid evolution for plant-soil feedbacks depend on ecological context. \textit{Proceedings of the Royal Society B} 281: 20140028. \href{https://lennonlab.github.io/assets/publications/terHorst_etal_2014.pdf}{(pdf}, \href{https://lennonlab.github.io/assets/publications/terHorst_etal_2014_correction.pdf}{correction)}
\item Dzialowski AR, Rzepecki M, Kostrzewska-Szlakowska I, Lennon JT, Kalinowska K, Palash A (2014) Are the abiotic and biotic characteristics of aquatic mesocosms representative of in situ conditions? \textit{Journal of Limnology} 73: 603–612. \href{https://lennonlab.github.io/assets/publications/Dzialowski_etal_2014.pdf}{(pdf)}
\item Bertilsson S, Burgin A, Carey CC, Fey SB, Grossart HP, Grubisic L, Jones I, Kirillin G, Lennon JT, Shade A, Smyth RL (2013) The under-ice microbiome of seasonally frozen lakes. \textit{Limnology and Oceanography} 58: 1998–2012. \href{https://lennonlab.github.io/assets/publications/Bertilsson_etal_2013.pdf}{(pdf)}
\item Lennon JT, Hamilton SK, Muscarella ME, Grandy AS, Wickings K, Jones SE (2013) A source of terrestrial organic carbon to investigate the browning of aquatic ecosystems. \textit{PLOS ONE} 8: e75771. \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2013.pdf}{(pdf)}
\item Ponsero AJ, Chen F, Lennon JT, Wilhelm SW (2013) Complete genome sequence of a non-lysogenizing cyanobacterial siphoviridae. \textit{Genome Announcements} 1(4): e00472-13. \href{https://lennonlab.github.io/assets/publications/Ponsero_etal_2013.pdf}{(pdf)}
\item Lauber CL, Ramirez KS, Aanderud ZT, Lennon JT, Fierer N (2013) Temporal variability in soil microbial communities across land-use types. \textit{The ISME Journal} 7: 1641–1650. \href{https://lennonlab.github.io/assets/publications/Lauber_etal_2013.pdf}{(pdf)}
\item Aanderud ZT, Jones SE, Schoolmaster DR, Fierer N, Lennon JT (2013) Sensitivity of soil respiration and microbial communities to altered snowfall. \textit{Soil Biology and Biochemistry} 57: 217–227. \href{https://lennonlab.github.io/assets/publications/Aanderud_etal_2013.pdf}{(pdf)}
\item Shade A, Peter H, Allison S, Baho D, Berga M, Burgmann H, Huber D, Langenheder S, Lennon JT, Martiny JBH, Matulich K, Schmidt TM, Handelsman J (2012) Fundamentals of microbial community resistance and resilience. \textit{Frontiers in Microbiology} 3: 417. \href{https://lennonlab.github.io/assets/publications/Shade_etal_2012.pdf}{(pdf)}
\item Lau JA, Lennon JT (2012) Rapid responses of soil microorganisms improve plant fitness in novel environments. \textit{Proceedings of the National Academy of Sciences of the United States of America} 109: 14058–14062. \href{https://lennonlab.github.io/assets/publications/Lau_Lennon_2012.pdf}{(pdf}, \href{https://lennonlab.github.io/assets/publications/Lau_Lennon_2012_Suppl.pdf}{supplement}, \href{https://www.sciencedaily.com/releases/2012/08/120814110957.htm}{press release}, \href{http://www.bacteriofiles.com/2012/09/bacteriofiles-micro-edition-103.html}{pod cast}, \\ \href{https://f1000.com/prime/717978110}{F1000 recommendation}, \href{https://www.pnas.org/doi/10.1073/pnas.2118690118}{correction)}
\item Lennon JT, Aanderud ZA, Lehmkuhl BK, Schoolmaster DR (2012) Mapping the niche space of soil microorganisms using taxonomy and traits. \textit{Ecology} 93: 1867–1879. \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2012.pdf}{(pdf}, \\ \href{https://esapubs.org/archive/ecol/E093/165/}{supplement}, \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2012_ESABull.pdf}{ESA Bulletin Photo Gallery)}
\item Burgin AJ, Hamilton SK, Jones SE, Lennon JT (2012) Denitrification by sulfur-oxidizing bacteria in a eutrophic lake. \textit{Aquatic Microbial Ecology} 66: 283–293. \href{https://lennonlab.github.io/assets/publications/Burgin_etal_2012.pdf}{(pdf)}
\item O'Brien JM, Hamilton SK, Kinsman-Costello LE, Lennon JT, Ostrom NE (2012) Nitrogen transformations in a through-flow wetland revealed using whole-ecosystem pulsed 15N additions. \textit{Limnology and Oceanography} 57: 221–234. \href{https://lennonlab.github.io/assets/publications/OBrien_etal_2012.pdf}{(pdf)}
\item Treseder KK, Balser TC, Bradford MA, Brodie EL, Eviner VT, Hofmockel KS, Lennon JT, Levine UY, MacGregor BJ, Pett-Ridge J, Waldrop MP (2012) Integrating microbial ecology into ecosystem models. \textit{Biogeochemistry} 109: 7–18. \href{https://lennonlab.github.io/assets/publications/Treseder_etal_2012.pdf}{(pdf)}
\item Lau JA, Lennon JT (2011) Evolutionary ecology of plant-microbe interactions: soil microbial structure alters natural selection on plant traits. \textit{New Phytologist} 192: 215–224. \href{https://lennonlab.github.io/assets/publications/Lau_Lennon_2011.pdf}{(pdf)}
\item Aanderud ZT, Lennon JT (2011) Validation of heavy-water stable isotope probing for the characterization of rapidly responding soil bacteria. \textit{Applied and Environmental Microbiology} 77: 4589–4596. \href{https://lennonlab.github.io/assets/publications/Aanderud_Lennon_2011.pdf}{(pdf)}
\item Fierer N, Lennon JT (2011) The generation and maintenance of diversity in microbial communities. \textit{American Journal of Botany} 98: 439–448. \href{https://lennonlab.github.io/assets/publications/Fierer_Lennon_2011.pdf}{(pdf)}
\item Jones SE, Lennon JT (2010) Dormancy contributes to the maintenance of microbial diversity. \textit{Proceedings of the National Academy of Sciences of the United States of America} 107: 5881-5886. \href{https://lennonlab.github.io/assets/publications/Jones_Lennon_2010.pdf}{(pdf)}
\item Thum RA, Lennon JT (2010) Comparative ecological niche models predictive the invasive spread of variable-leaf milfoil (\textit{Myriophyllum heterophyllum}) and its potential impact on closely related native species. \textit{Biological Invasions} 12: 133–143. \href{https://lennonlab.github.io/assets/publications/Thum_Lennon_2010.pdf}{(pdf)}
\item Jones SE, Lennon JT (2009) Evidence for limited microbial transfer of methane in a planktonic food web. \textit{Aquatic Microbial Ecology} 58: 45–53. \href{https://lennonlab.github.io/assets/publications/Jones_Lennon_2009.pdf}{(pdf)}
\item Lennon JT, Martiny JBH (2008) Rapid evolution buffers ecosystem impacts of viruses in a microbial food web. \textit{Ecology Letters} 11: 1177–1188. \href{https://lennonlab.github.io/assets/publications/Lennon_Martiny_2008.pdf}{(pdf}, \href{https://lennonlab.github.io/assets/publications/Lennon_Martiny_2008_Suppl.pdf}{supplement)}
\item Lennon JT, Cottingham KL (2008) Microbial productivity in variable resource environments. \textit{Ecology} 84: 1001–1014. \href{https://lennonlab.github.io/assets/publications/Lennon_Cottingham_2008.pdf}{(pdf}, \href{https://lennonlab.github.io/assets/publications/Lennon_Cottingham_2008_Suppl.pdf}{supplement}, \href{https://lennonlab.github.io/assets/publications/Lennon_Cottingham_2008_ESABull.pdf}{ESA Bulletin Photo Gallery)}
\item Lennon JT, Khatana SAM, Marston MF, Martiny JBH (2007) Is there a cost of virus resistance in marine cyanobacteria? \textit{The ISME Journal} 1: 300–312. \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2007.pdf}{(pdf}, \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2007_ISMECov.jpg}{featured article)}
\item Lennon JT (2007) Diversity and metabolism of marine bacteria cultivated on dissolved DNA. \textit{Applied and Environmental Microbiology} 73: 2799–2805. \href{https://lennonlab.github.io/assets/publications/Lennon_2007.pdf}{(pdf)}
\item Reyns NB, Langenheder S, Lennon J (2007) Specialization vs. diversification: a trade-off for young scientists? \textit{Eos} 88: 343. \href{https://lennonlab.github.io/assets/publications/Reyns_etal_2007.pdf}{(pdf)}
\item Dzialowski AD, Lennon JT, Smith VH (2007) Food web structure provides biotic resistance against plankton invasion attempts. \textit{Biological Invasions} 9: 257–256. \href{https://lennonlab.github.io/assets/publications/Dzialowski_etal_2007.pdf}{(pdf)}
\item Lennon JT, Faiia AM, Feng X, Cottingham KL (2006) Relative importance of CO\textsubscript{2} recycling and CH\textsubscript{4} pathways in lake food webs along a terrestrial carbon gradient. \textit{Limnology and Oceanography} 51: 1602–1613. \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2006.pdf}{(pdf}, \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2006_Suppl.pdf}{supplement)}
\item Thum RA, Lennon JT (2006) Is hybridization responsible for invasive growth of non-indigenous water-milfoils? \textit{Biological Invasions} 84: 1061–1066. \href{https://lennonlab.github.io/assets/publications/Thum_Lennon_2006.pdf}{(pdf)}
\item Cottingham KL, Lennon JT, Brown BL (2005) Regression versus ANOVA. \textit{Frontiers in Ecology and the Environment} 3: 358. \href{https://lennonlab.github.io/assets/publications/Cottingham_etal_2005b.pdf}{(pdf)}
\item Cottingham KL, Lennon JT, Brown BL (2005) Knowing when to draw the line: designing more informative ecological experiments. \textit{Frontiers in Ecology and the Environment} 3: 145–152. \href{https://lennonlab.github.io/assets/publications/Cottingham_etal_2005a.pdf}{(pdf}, \href{https://lennonlab.github.io/assets/publications/Cottingham_etal_2005a_Suppl.pdf}{supplement)}
\item Lennon JT, Pfaff LE (2005) Source and supply of terrestrial carbon affects aquatic microbial metabolism. \textit{Aquatic Microbial Ecology} 39: 107–119. \href{https://lennonlab.github.io/assets/publications/Lennon_Pfaff_2005.pdf}{(pdf)}
\item Thum RA, Lennon JT, Connor J, Smagula AP (2005) A DNA fingerprinting approach for distinguishing native and non-native milfoils. \textit{Lake and Reservoir Management} 21: 1–6. \href{https://lennonlab.github.io/assets/publications/Thum_etal_2005.pdf}{(pdf)}
\item Lennon JT (2004) Experimental evidence that terrestrial carbon subsidies increase CO\textsubscript{2} flux from lake ecosystems. \textit{Oecologia} 138: 584–591. \href{https://lennonlab.github.io/assets/publications/Lennon_2004.pdf}{(pdf)}
\item Lennon JT, Smith VH, Dzialowski AR (2003) Invasibility of plankton food webs along a trophic state gradient. \textit{Oikos} 102: 191–203. \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2003.pdf}{(pdf)}
\item Dzialowski AR, Lennon JT, O'Brien WJ, Smith VH (2003) Predator-induced phenotypic plasticity in the exotic cladoceran \textit{Daphnia lumholtzi}. \textit{Freshwater Biology} 48: 1593–1602. \href{https://lennonlab.github.io/assets/publications/Dzialowski_etal_2003.pdf}{(pdf}, \href{https://lennonlab.github.io/assets/publications/Dzialowski_etal_2003_Cover.pdf}{cover)}
\item Cottingham KL, Brown BL, Lennon JT (2001) Biodiversity may regulate the temporal variability of ecological systems. \textit{Ecology Letters} 4: 72–85. \href{https://lennonlab.github.io/assets/publications/Cottingham_etal_2001.pdf}{(pdf)}
\item Lennon JT, Smith VH, Williams K (2001) Influence of temperature on exotic \textit{Daphnia lumholtzi} and implications for invasion success. \textit{Journal of Plankton Research} 23: 425–434. \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2001.pdf}{(pdf)}
\item deNoyelles FJ, Wang SH, Meyer JO, Huggins DG, Lennon JT, Kolln WS, Randtke SJ (1999) Water quality issues in reservoirs: some considerations from a study of a large reservoir in Kansas. \textit{Proceedings of the 49th Annual Environmental Engineering Conference, University of Kansas, Lawrence}. \href{https://lennonlab.github.io/assets/publications/deNoyelles_etal_1999.pdf}{(pdf)}
\end{etaremune}
\section*{Grants and funding}
\vspace{-1.25em}
\noindent
\begin{tabularx}{\textwidth}{@{}l@{\hspace{2em}}X@{}}
2025--2026 & Pending: National Science Foundation (NSF) “Conference: A unifying framework for dormancy across scales in natural, managed, and engineered ecosystems” Co-PI, \$99,000\\
2025--2030 & Pending: National Institutes of Health (NIH) “Cellular dormancy and virus entrapment” PI, \$2,161,566 (advanced to second level of review at Council meeting)\\
2025--2028 & Department of Natural Resources (DNR) "Development and testing of microbial mitigation of coalbed methane emissions in Indiana: A geo-microbial-engineering approach” Co-PI, \$287,295 \\
2023--2024 & Department of Defense (DoD) “Molecular-based methods for the mark-recapture of microorganisms” PI, \$225,000 \\
2023 & Humboldt Research Fellowship, Alexander von Humboldt Foundation, Germany, €60,000 (\$68,780) \\
2022--2025 & Army Research Office (ARO) “Complexity of the gut microbiome: a quantitative and experimental approach” PI, \$449,862 \\
2020--2025 & National Science Foundation (NSF) “BII-Implementation: Multiscale interactions of nested genomes in symbiosis: From genes to global change” Co-investigator with R Whitaker, \$12.5M \\
2020--2023 & National Science Foundation (NSF) “Collaborative Research: BEE: A dormancy refuge in host-parasite eco-evolutionary dynamics” PI, \$976,617 \\
2020--2025 & National Science Foundation (NSF) “CNH2-L: Resilience to drought or a drought of resilience? The potential for interactions and feedbacks between human adaptation and ecological adaptation” Co-PI with J Lau, \$1,599,684 \\
2020--2023 & National Aeronautics and Space Administration (NASA) “Energy limitation and the evolution of microbial dormancy” PI, \$733,792 \\
2020 & Army Research Office (ARO) "Mechanistic insight into bacterial metabolism from long-term evolution experiments" PI, \$550,000 \\
2018--2020 & Army Research Office (ARO) “Microbial evolution: linking genes, phenotype, and fitness in bacterial populations” PI, \$499,330 \\
2018--2019 & Indiana University Collaborative Research Grant (IUCRG). “Complexity of the gut microbiome: an experimental approach” PI, \$74,990 \\
2018--2019 & National Aeronautics and Space Administration (NASA) “Microbial dormancy and adaptation to energy-limitation” Co-PI with W Shoemaker, \$4,997 \\
2018--2021 & National Science Foundation (NSF) “Microbiome influences on the development of sociality in uni- and bi-parental rodents” Senior Personnel with G Demas, \$699,573 \\
2017--2018 & Army Research Office (ARO) "Connecting phenotype to genotype in evolved prokaryotic populations.” Co-PI with J.B. McKinlay. \$197,390 \\
2015--2018 & National Science Foundation (NSF) “Dissertation Research: Metabolic resource partitioning: scaling microbial physiology from individual activity to ecosystem function” PI, \$19,004 \\
2015--2022 & Department of Defense, Multidisciplinary University Research Initiatives (MURI) Program, “Mechanisms of prokaryotic evolution” PI, \$6,248,455 \\
2015--2020 & National Science Foundation (NSF) “Dimensions: Collaborative Research: Microbial seed banks: processes and patterns of dormancy-driven biodiversity” PI, \$1,997,144 \\
2015--2016 & Indiana Academy of Science “Metabolic fate of terrestrial carbon resources: anabolic vs. catabolic processes” Co-PI with M Muscarella, \$2,200 \\
2013--2015 & Polish Ministry of Science and Higher Education “Interactive effects of multiple regulating factors on cladoceran species richness and community structure” Co-PI with A Dzialowski, \$128,000 \\
2012--2014 & Center for Water Sciences (CWS) and Environmental Science and Policy Program (ESPP), Michigan State University, “Building partnerships in water research between Grand Valley State University and Michigan State University: the molecular genetic basis for invasiveness of milfoils and a time-series observatory for investigating metabolism in Muskegon Lake” Co-PI with P. Ostrom, \$99,996 \\
2012--2015 & National Science Foundation (NSF) “Collaborative Research: PEATcosm: Understanding the interactions of climate, plant functional groups and carbon cycling in peatland ecosystems” Co-PI with E Kane, \$677,185 \\
2011--2014 & United States Department of Agriculture (USDA), Agriculture and Food Research Initiative (AFRI) “Microbial seed banks: patterns and mechanisms of bacterial dormancy in soils” PI, \$499,956 \\
2011--2014 & National Science Foundation (NSF), “Do biological processes result in the atmospheric 17O mass independent anomaly in nitrous oxide? Resolution and establishment of 17O as a tracer of microbial production.” Co-PI with N Ostrom \$677,366 \\
2011--2012 & Huron Mountain Wildlife Foundation (HMWF), “Browning of freshwater ecosystems: will terrestrial carbon loading alter the diversity and function of aquatic microbial communities?” PI, \$5,600 \\
2011--2012 & BEACON, Michigan State University, “Contemporary evolution of cyanobacteria and viruses: implications for marine nutrient cycling” PI, \$76,964 \\
2010--2013 & National Science Foundation (NSF), “Greenhouse facility to support field ecology and evolution research and teaching at the Kellogg Biological Station”, Co-PI with K Gross, \$200,000 \\
2010--2013 & National Science Foundation (NSF), “Field facilities improvements for terrestrial and aquatic ecology at the Kellogg Biological Station.” Co-PI with K. Gross, \$176,000 \\
2009--2012 & Polish Ministry of Sciences, “Zooplankton invasions: how do local and regional processes affect invasion success in relation to ecosystem productivity and intensity of disturbances” Co-PI with A Dzialowski, \$54,000 \\
2009--2012 & National Science Foundation (NSF) “Collaborative Research: Characterizing the constraints on virus infection of cyanobacteria” Co-PI with S Wilhelm, \$500,000 \\
2008--2011 & Environmental Change Institute, University of Illinois, “Terrestrial carbon loss to aquatic ecosystems: pattern detection and hypothesis testing at the regional scale” Co-PI with J. Fraterrigo, \$25,000 \\
2009--2010 & Gordon \& Betty Moore Foundation and the Broad Institute, “Identifying viral mechanisms involved in rapid co-evolutionary dynamics between marine \textit{Synechococcus} and its phage” PI, payment in kind sequencing \\
2009--2012 & National Science Foundation (NSF) “Terrestrial carbon in aquatic ecosystems: experimental tests of the subsidy-stability hypothesis” PI, \$350,695 \\
2008--2011 & United States Department of Agriculture (USDA) “Moisture variability as a master regulator of microbial diversity and soil respiration across an agricultural landscape” PI, \$324,000 \\
2008--2010 & Center for Water Sciences, Michigan State University, “Microbial and ecosystem responses to land-water linkages: the energetic importance of terrestrial-derived dissolved organic carbon (DOC) in lakes” PI, \$142,318 \\
2007--2010 & National Science Foundation (NSF) “Water level fluctuations and internal eutrophication in lakes and wetland” Co-PI with S Hamilton, \$391,734 \\
2007--2010 & Michigan Agricultural Experiment Station, Rackham Foundation “Microbial responses to soil moisture variability in agricultural landscapes” PI, \$75,000 \\
2006--2009 & United States Department of Agriculture (USDA) “Pulsed ecosystem activity: Responses of soil microorganisms to variable water supply” PI, \$110,000 \\
2007 & Center for Water Sciences, Michigan State University “Towards a mechanistic framework of how changing temperatures affect aquatic bacterial community structure and function” PI, \$28,254 \\
2006--2009 & Center for Water Sciences, Michigan State University “Quantifying biogeochemical processes in flow-through wetlands” Co-PI with S Hamilton, \$145,036 \\
2005--2007 & Environmental Protection Agency (EPA) and the NH Department of Environmental Services “Using dispersal and environmental variables to predict the occurrence and susceptibility to invasion by non-native milfoil” Co-PI with R Thum, \$50,000 \\
2002--2004 & National Science Foundation (NSF) “Doctoral Dissertation Improvement Grant (DDIG): Linking lakes with the landscape: fate of terrestrial carbon in plankton food webs” Co-PI with K Cottingham, \$8,075 \\
2002--2004 & United States Geological Survey (USGS) \& National Institutes for Water Resources (NIWR) “Linking lakes with the landscape: fate of terrestrial carbon in planktonic food webs” PI, \$30,020 \\
\end{tabularx}
\section*{Invited keynote, symposium, and conference presentations}
\vspace{-1.25em} % Adjust this value as needed
\noindent
\begin{longtable}{@{}p{3em}@{\hspace{1.5em}}p{0.87\textwidth}@{}}
2026 & Invited workshop speaker, “Coarse-graining microbial ecology: from genes to physiological strategies to communities across environments”, Kavli Institute of Theoretical Physics (KITP), Santa Barbara, California, USA \\
2026 & Invited workshop speaker, "EMBO: Ecological theories for microbial ecology: integrating molecular data" Ancona, Italy\\
2025 & Invited speaker, "Microbial communities: energetics and dynamics across space and time", National Institute for Theory and Mathematics in Biology (NITMB), Chicago, Illinois, USA\\
2025 & Invited speaker, "ASM-SIAT Symposium on Microbes in Biotechnology", Shenzhen Institutes of Advanced Technology (SIAT), Chinese Academy of Sciences (CAS)\\
2025 & Invited symposium speaker, "Fungal island biogeography" Mycological Society of America, Portland, Oregon, USA\\
2025 & Invited symposium speaker, “Climate change and health: from micro to macro”, Center for Molecular and Clinical Epidemiology of Infectious Diseases (MAC-EPID), University of Michigan, Ann Arbor, Michigan, USA \\
2025 & Keynote speaker, Applied and Environmental Sciences (AES) Retreat, American Society of Microbiology \\
2025 & Invited speaker, “Synthetic biology enabling tools”, American Society for Biochemistry and Molecular Biology, Chicago, Illinois, USA \\
2025 & Invited speaker, “Evolutionary ecology of dormancy in a community context”, Ecological Society of America, Baltimore, Maryland, USA \\
2025 & Invited speaker, Council on Microbial Sciences (COMS) meeting, American Society of Microbiology \\
2024 & Invited speaker, Union Session: “One Health, Microbes, and Geosciences”, American Geophysical Union, Washington, District of Columbia, USA \\
2024 & Plenary speaker, Chinese Association of Microbial Ecology, Qingdao, China \\
2024 & Plenary speaker, International Symposium on Soil Microbiomes and Soil Health, Yangling, China \\
2024 & Plenary speaker, mLife Research Conference, Shenzhen, China \\
2024 & Invited speaker, “Harnessing transformational technologies symposium: Confronting the threats of climate change on global stability” Los Alamos National Laboratory and the Committee on Science, Technology, and Law of the National Academies of Sciences, Engineering, and Medicine. Santa Fe, New Mexico, USA \\
2024 & Invited speaker, mSystems Thinking Series, “Critical concepts in microbial dormancy”, Virtual \\
2024 & Invited speaker, ASM Public and Scientific Affairs Committee (PSAC) Meeting, Virtual \\
2023 & Plenary speaker, “Critical phenomena and challenges emerging from dormancy”, University of Frankfurt, Germany \\
2023 & Invited speaker, “Understanding the linkage between geosciences and biothreats for enhancing national and global security”, American Geophysical Union, San Francisco, California, USA \\
2023 & Invited workshop speaker, “Quantitative principles in microbial physiology”, The Abdus Salam International Centre for Theoretical Physics, Trieste, Italy \\
2023 & Invited speaker, “Microbes and climate change: applying research and expanding surveillance on a global scale”, American Society for Microbiology, Houston, Texas, USA \\
2023 & Invited panelist, “Communicating about climate change with a lay audience”, American Society for Microbiology, Houston, Texas, USA \\
2022 & Invited speaker, National Academies of Science, Engineering, and Medicine. Board on Life Sciences, “Harnessing microbial diversity for the bioeconomy”. Virtual \\
2022 & Invited moderator, U.S. Congressional briefing, “Big Problems, Tiny Solutions”, Virtual \\
2022 & Roger D. Milkman Endowed Lecturer, Marine Biological Laboratory, Woods Hole, Massachusets, USA \\
2022 & Invited speaker, “Communicating about climate change”, American Society for Microbiology, Washington, District of Columbia, USA \\
2022 & Plenary speaker, Midwest Ecology and Evolution Conference (MEEC), University of Kansas, Lawrence, Kansas, USA \\
2022 & Invited speaker, “Workshop: Impacts of dormancy and latency on host-parasite dynamics”, Hausdorff Research Institute for Mathematics (HIM) Universität Bonn, Bonn, Germany \\
2022 & Distinguished/Waksman Foundation Lecture, American Society for Microbiology, Student Chapters, Virtual \\
2022 & Invited workshop speaker, Microbiome Centers Consortium (MCC), University of Chicago, Illinois, USA \\
2022 & Invited workshop speaker, “Quantitative biology of non-growing microbes”, Kavli Institute of Theoretical Physics (KITP), Santa Barbara, California, USA \\
2022 & Opening speaker, 4th Workshop on Microbial Life under Energy Limitation, Sandbjerg Castle, Denmark \\
2022 & Distinguished lecturer, Indiana Branch of the American Society for Microbiology, Annual Meeting, West Lafayette, Indiana, USA \\
2021 & Invited workshop speaker, "Ecology and Evolution of Microbial Communities" course, Kavli Institute of Theoretical Physics (KITP), Santa Barbara, California, USA \\
2020 & Keynote speaker, “Microbial Ecology \& Evolution (MEE)”, Virtual \\
2019 & Invited workshop speaker, "Deciphering the Microbiome: Empowering theory, cross-system analyses, and innovative analytics to propel advances in microbiome science" National Science Foundation, Alexandria, Virginia, USA \\
2019 & Plenary speaker, “Evolutionary consequences of dormancy”, Technische Universität Berlin, Germany \\
2019 & Invited speaker, Inspire Session: “Treasure and challenges in continental- and global-scale microbial ecology research” Ecological Society of America, Louisville, Kentucky, USA \\
2019 & Invited Lecturer, Microbial Biodiversity Course, Marine Biological Laboratory, Massachusetts, USA \\
2018 & Invited Lecturer, Strategies and Techniques for Analyzing Microbial Population Structures (STAMPS), Marine Biological Laboratory, Massachusets, USA \\
2018 & Invited Lecturer, Microbial Biodiversity Course, Marine Biological Laboratory, Massachusetts, USA\\
2018 & Plenary speaker, Midwest Ecology and Evolution Conference (MEEC), Michigan State University, Hickory Corners, Michigan, USA \\
2018 & Invited speaker, Ecological Society for America, Special Session: “Plant microbiomes in a changing world”, New Orleans, Louisiana, USA \\
2017 & Invited speaker, Argonne Soil Metagenomics Meeting, Argonne National Lab, Illinois, USA \\
2017 & Invited speaker, Gordon Research Conference, Microbial Population Biology, Andover, New Hampshire, USA \\
2017 & Invited speaker, Gordon Research Conference, Applied \& Environmental Microbiology, South Hadley, Massachusetts, USA \\
2017 & Invited speaker, Special Session: "Eco-evo feedbacks in microbial communities". American Society for Microbiology, New Orleans, Louisiana, USA\\
2017 & Invited speaker, Special Session: "Integrating trait-based ecology across plants and microbes to predict ecosystem functioning". Ecological Society of America, Portland, Oregon, USA \\
2016 & Invited workshop speaker, National Academies of Sciences, Engineering, and Medicine meeting on Microbiomes of the Built Environment: From Research to Application, Irvine, California, USA\\
2016 & Invited speaker, Special Session: "The role of microbes in biogeochemical cycles: linking responses to ecosystem processes and environmental change". American Geophysical Union, San Francisco, California, USA\\
2016 & Plenary speaker: 7th annual translational plant science program. Theme: plant-soil microbiome, Virginia Tech, Blacksburg, Virginia, USA\\
2016 & Invited workshop, “Skin microbiome – untold stories” (presentation given by Sarah Cummins) Society of Cosmetic Chemists, Orlando, Florida, USA \\
2015 & Invited speaker, Explorations in Data Analyses for Metagenomic Advances in Microbial Ecology (EDAMAME), Michigan State University, Hickory Corners, Michigan, USA \\
2015 & Introductory speaker, Summer Soil Institute, Colorado State University, Fort Collins, Colorado, USA \\
2015 & Invited speaker, Special Session: “Rewetting dry soil: the century’s unifying problem in soil microbial ecology”. Ecological Society of America, Baltimore, Maryland, USA\\
2014 & Invited speaker, Special Session: "Seeing the trees for the forest: deciphering the biodiversity of soils” International Society for Microbiology, Seoul, Korea\\
2014 & Rouge roundtable panelist, “Sleeping beauties: dormancy of bacteria in nature” International Society for Microbiology, Seoul, Korea \\
2014 & Invited speaker, Special Symposium: “Communities writ small: Integrating microbial systems into community ecology”, Ecological Society of America, Sacramento, California, USA\\
2014 & Invited speaker, Explorations in Data Analyses for Metagenomic Advances in Microbial Ecology (EDAMAME), Michigan State University, Hickory Corners, Michigan, USA \\
2013 & Keynote speaker, Argonne soil metagenomics meeting, Argonne National Laboratory, Bloomingdale, Illinois, USA\\
2013 & Keynote speaker, “Understanding, managing and protecting microbial communities in aquatic and terrestrial ecosystems. Exploring the trait-based functional biodiversity approach”. ESF Eurocores Ecological and Evolutionary Functional Genomics (EuroEEFG) workshop. Wageningen, The Netherlands\\
2013 & Keynote speaker, XIII Symposium on Aquatic Microbial Ecology, Stresa, Italy\\
2013 & Invited speaker, Special Session: “Impact of bacteriophage in the environment”. Society for General Microbiology (SGM) Sussex University, East Sussex, United Kingdom\\
2013 & Invited speaker, Special Session: “Ecological theory in microbial ecology”, Ecological Society of America, Minneapolis, Minnesota, USA\\
2013 & Invited speaker, Special Symposium: “Integrating soil biodiversity into discussions of global sustainability: the time is now”. Ecological Society of America, Minneapolis, Minnesota, USA\\
2013 & Invited speaker, Special Session, “Microbial mediated retention/transformation of organic and inorganic materials in freshwater and marine ecosystems”. Association for the Sciences of Limnology and Oceanography, New Orleans, Louisiana, USA\\
2012 & Invited speaker, “Microbial life under extreme energy limitation” Aarhus University, Denmark\\
2012 & Introductory speaker, Special Session: “Global browning of inland waters: implications of changing terrestrial dissolved organic carbon concentrations for aquatic ecosystems”. Ecological Society of America, Portland, Oregon, USA\\
2010 & Invited speaker, Gordon Research Conference, Speaker, Marine Microbes, Tilton, New Hampshire, USA\\
2010 & Invited speaker, Argonne Soil Metagenomics Meeting, Argonne National Laboratory, Lemont, Illinois, USA\\
2009 & Invited speaker, SCOR Viral Ecology Meeting, University of Delaware, Newark, Delaware, USA\\
2009 & Invited speaker, Plant Virus Ecology Network, Ca'Tron di Roncade, Italy\\
2009 & Tutorial speaker, Special Session: “Increased supply of external organic carbon: effects on food web structure and efficiency of carbon transfer” Association for the Sciences of Limnology and Oceanography, Nice, France\\
2008 & Invited speaker, Special Session: "Have microbes read the book? Testing ecological theory in microbial communities". Ecological Society of America, Milwaukee, Wisconsin, USA\\
2006 & Invited speaker, Special Session: “Ecological Principles in Microbial Communities”, International Society for Microbial Ecology, Vienna, Austria\\
2007 & Invited speaker, High latitude terrestrial and freshwater ecosystems: interactions and response to environmental change, Abisko, Sweden\\
\end{longtable}
\vspace{-1.5em}
\section*{Invited seminars}
\vspace{-1.25em} % Adjust this value as needed
\noindent
\begin{longtable}{@{}p{3em}@{\hspace{1.5em}}p{0.87\textwidth}@{}}
2026 & Baylor University, Department of Biology \\
2025 & University of Illinois, Department of Microbiology \\
2025 & University of Alaska Fairbanks, Department of Biology and Wildlife \\
2025 & University of Maryland, Department of Biology \\
2024 & Ocean University of China, Institute of Evolution and Marine Biodiversity \\
2024 & Northwest A\&F University, Department of Environmental Science and Engineering \\
2024 & University of Southern California, Department of Biological Sciences \\
2024 & University of California San Diego, Department of Ecology, Behavior, and Evolution \\
2024 & Carnegie Institute of Science \\
2024 & Pennsylvania State University, One Health Microbiome Center Seminar Series \\
2024 & Lehigh University, Earth \& Environmental Sciences \\
2023 & ETH Zürich, Institute of Microbiology \\
2023 & University of Vienna, Department of Microbiology and Ecosystem Science \\
2023 & Eawag, Swiss Federal Institute of Aquatic Science and Technology \\
2023 & ETH Zürich, Centre for Origin and Prevalence of Life (COPL) \\
2023 & University of Aberdeen, School of Biological Sciences \\
2023 & Frankfurt Institute for Advanced Studies, CMMS \\
2023 & National Science Foundation, Climate Change Coordinating Committee (C4) \\
2023 & R.D. Holt Seminar Series, University of Florida \\
2022 & InterActive Biomes Group, CSIRO, Australia \\
2022 & University of Hawaii, Pacific Biosciences Research Center \\
2022 & University of Florida, Department of Biology \\
2020 & Dartmouth College; Ecology, Evolution, Ecosystems and Society (EEES) \\
2019 & University of North Carolina Chapel Hill, Department of Microbiology and Immunology \\
2018 & University of Wisconsin, Distinguished Lecture in Microbiology \\
2018 & Pennsylvania State University, Plant Pathology and Environmental Microbiology \\
2018 & Purdue University, Microbiome Seminar Series \\
2017 & Yale University, Department of Ecology and Evolutionary Biology \\
2017 & University of Georgia, Odum School of Ecology \\
2017 & German Centre for Integrative Biodiversity Research (iDiv) \\
2017 & University of Tennessee, Department of Microbiology \\
2017 & University of Idaho, Department of Biological Sciences \\
2016 & MIT, Civil and Environmental Engineering \\
2016 & University of Minnesota, Ecology, Evolution, and Behavior \\
2016 & University of British Columbia, BioDiversity Research Centre Seminar \\
2016 & Michigan State University, Plant, Soil, and Microbial Sciences \\
2016 & Uppsala University, Ecology and Genetics \\
2016 & Hope College, Biology Department \\
2016 & University of Montana, Flathead Lake Biological Station \\
2016 & University of Montana, Cell, Molecular and Microbial Biology \\
2016 & Montana State University, Microbiology and Immunology \\
2015 & Duke University, University Program in Ecology \\
2015 & East Carolina University, Biology Department \\
2015 & Hobart and William Smith Colleges \\
2015 & Indiana University, CISAB \\
2015 & Indiana University, Advance College Project \\
2015 & Vietnam National University, Department of Microbiology \\
2014 & University of Tennessee, EEB \\
2014 & University of Louisville, Biology Department \\
2014 & University of Illinois, Ecology, Evolution, and Conservation Biology \\
2014 & Indiana University East and Earlham College \\
2014 & University of Kentucky, Plant \& Soil Sciences \\
2014 & Loyola University Chicago, Biology Department \\
2014 & Miami University, Ecology, Evolution, and Environmental Biology \\
2014 & Purdue University, Biological Sciences, EEB \\
2013 & University of Texas at Austin, Integrative Biology \\
2013 & University of Oregon, Ecology and Evolutionary Biology \\
2013 & UC Santa Barbara, Ecology, Evolution, and Marine Biology \\
2013 & The Netherlands Institute of Ecology (NIOO-KNAW) \\
2013 & University of Michigan, EEB \\
2012 & Virginia Tech, Biological Sciences \\
2012 & Northwestern University, Biological Sciences \\
2012 & University of Jyväskylä, Finland \\
2012 & University of Quebec at Montreal, Canada \\
2011 & Indiana University, Biology Department \\
2011 & University of Massachusetts, Amherst, Microbiology \\
2011 & Oregon State University, CGRB \\
2011 & California Academy of Sciences \\
2010 & Michigan Technological University, Forest Resources and Environmental Science \\
2010 & Michigan State University, Ecosystems Biogeochemistry \\
2010 & Wright State University, Biology and Earth \& Environmental Sciences \\
2009 & University of Illinois, Ecology, Evolution, and Conservation Biology \\
2008 & University of Illinois at Springfield, Merck Seminar \\
2008 & Western Michigan University, Biological Sciences \\
2007 & University of Tennessee, Knoxville, Haines-Morris Series \\
2007 & Grand Valley State University, Annis Water Resources Institute \\
2005 & Michigan State University, Microbiology and Molecular Genetics \\
2005 & Kellogg Biological Station, Michigan State University \\
2005 & Dartmouth College, Earth Sciences \\
2004 & UC Berkeley, Division of Ecosystem Sciences \\
2004 & Brown University, Ecology \& Evolutionary Biology \\
2002 & Colby-Sawyer College, Biology Program \\
\end{longtable}
\vspace{-1.5em}
\section*{Organizer for symposia, workshops, and conferences}
\vspace{-1.25em} % Adjust this value as needed
\noindent
\begin{longtable}{@{}p{3em}@{\hspace{1.5em}}p{0.87\textwidth}@{}}
2025 & Co-organizer, “Cancer dormancy and therapy resistance: from models to the clinic” Rome, Italy \\
2025 & Co-chair, colloquium steering committee “Microbes, human health, and climate change” American Academy of Microbiology, Washington, District of Columbia, USA \\
2024 & Organizer “Enhancing methane mitigation strategies via methanogenesis and methanotrophy” Microbe meeting, American Society for Microbiology, Atlanta, Georgia, USA \\
2023 & Co-organizer, “Critical phenomena and challenges emerging from dormancy” Goethe University, Frankfurt, Germany \\
2023 & Co-organizer, “Dormancy, rarity, and community dynamics” Ecological Society of America, Portland, Oregon, USA \\
2022 & Co-chair, colloquium steering committee “Microbes in models: steps for integrating microbial activity into climate models” American Academy of Microbiology, Washington, District of Columbia, USA \\
2022 & Mini-conference co-organizer “Climate change and microbes” Microbe meeting, American Society for Microbiology, Washington, District of Columbia, USA \\
2020 & Symposium organizer, “Birth and death: a quantitative approach to microbial populations” American Society for Microbiology, Chicago, Illinois, USA \\
2019 & Plenary organizer. "Evolution in the wild" Microbe meeting, American Society for Microbiology, San Francisco, California, USA \\
2018 & Symposium co-organizer. "Assembly and function of microbial communities: a trait-based approach" Microbe meeting, American Society for Microbiology, Atlanta, Georgia, USA \\
2017 & Retreat co-organizer, Microbial Ecology and Evolution Track, American Society for Microbiology, Washington, District of Columbia, USA \\
2017 & Special symposium co-organizer. “Eco-evo feedbacks in microbial communities”. Microbe meeting, American Society for Microbiology, New Orleans, Louisiana, USA\\
2015 & Special session co-organizer, “Trait-based ecology at the microscale” Ecological Society of America, Baltimore, Maryland, USA \\
2014 & Special session co-organizer, “Microbially mediated ecosystem services: The good, the bad and the ugly” Joint Aquatic Sciences Meeting, Portland, Oregon, USA \\
2013 & Organizing committee: First Israel-U.S. Kavli Frontiers of Science symposium, Israel Academy of Sciences, U.S. National Academy of Sciences, and the Kavli Foundation, Irvine, California \\
2013 & Special symposium organizer, “Next generation of ecological indicators: defining which microbial properties matter most to ecosystem function and how to measure them” Ecological Society of America, Minneapolis, Minnesota, USA \\
2012 & Co-investigator: John Wesley Powell Center for Analysis and Synthesis, “Next generation of ecological indicators: defining which microbial properties matter most to ecosystem function and how to measure them”. Fort Collins, Colorado, USA (2012-2015) \\
2012 & Round table co-organizer: “Frontiers in microbial ecosystem science: energizing the research agenda”. International Society for Microbial Ecology, Copenhagen, Denmark \\
2012 & Invited co-convener: “The unknowns: rare ones and unculturables”. International Society for Microbial Ecology. Copenhagen, Denmark \\
2012 & Workshop co-organizer: “Answering ecological questions with metagenomic sequencing”. Ecological Society of America, Portland, Oregon, USA\\
2011 & Special symposium organizer: “Micro-managing the planet: the role of microbial ecology in earth stewardship”. Ecological Society of America, Austin, Texas, USA \\
2010 & Special session co-organizer: “Micro-managing the planet: the role of microbial ecology in earth stewardship”. Ecological Society of America, Pittsburgh, Pennsylvania, USA\\
2002 & Special session co-organizer: “Ecological implications of terrestrial inputs into lakes and ponds”. Association for the Sciences of Limnology and Oceanography, Victoria, British Columbia, USA \\
\end{longtable}
\vspace{-1.5em}
\section*{Invited participant: workshops, round tables, and synthesis groups}
\vspace{-1.25em} % Adjust this value as needed
\noindent
\begin{longtable}{@{}p{2cm}@{\hspace{1em}}p{14cm}@{}}
2025 & Invited participant, Schmidt Sciences "Biology for Greenhouse Gas Mitigation Workshop", Washington, District of Columbia, USA\\
2025 & Invited participant, “Microbes and climate change global strategy meeting” American Academy of Microbiology, Washington, District of Columbia, USA \\
2025 & Invited participant, "Microbial solutions for climate change - towards an economically sustainable future", American Society for Microbiology, Los Angeles, California, USA \\
2024 & Invited colloquium participant, “Impacts of the changing climate on water, water-borne pathogens, and human health colloquium” American Academy of Microbiology and the American Geophysical Union, Washington, District of Columbia, USA \\
2024 & Invited participant, “Dormancy in soil microbiomes” Northwest University, Xi’An, China \\
2024 & Invited moderator, American Society of Microbiology, Meet the Policymaker Series: National Climate Assessment, virtual \\
2024 & Invited workshop participant, “Developing a rapid, cost-effective, and information-rich metric of biodiversity resilience” German Centre for Integrative Biodiversity Research (iDiv), Leipzig, Germany \\
2024 & Invited participant, “Soil microbial strategies for climate mitigation” Oath Soil Life, Las Vegas, Nevada, USA \\
2023 & Invited workshop participant, “LIFE: Leveraging Innovation From Evolution”, virtual \\
2023 & Invited participant and opening remarks, “Microbiology and climate change communications workshop: opportunities and challenges” American Society for Microbiology, virtual \\
2023 & Invited panelist, “How to effectively communicate about climate change with a lay audience” American Society for Microbiology, Houston, Texas, USA \\
2023 & Invited colloquium participant, “The role of microbes in mediating methane emissions – act today to prepare for tomorrow” American Academy of Microbiology and the American Geophysical Union, Washington, District of Columbia, USA \\
2022 & Invited workshop participant, “Integrating macro-ecology and macro-evolution for biodiversity assessment” Schoodic Institute, Maine, USA \\
2022 & Invited workshop participant, “Understanding the rules of life: harnessing microbiomes for societal benefit”, Washington, District of Columbia, USA \\
2022 & Participant, Microbiome Centers Consortium, Chicago, Illinois, USA (virtual) \\
2017 & Invited workshop participant, “Patterns of microbial and macrobial diversity” German Centre for Integrative Biodiversity Research (iDiv), Leipzig, Germany \\
2017 & Invited workshop participant, “Continuum of persistence: ecology and function of persistent virus infections” Cascais, Portugal \\
2016 & Invited workshop participant, “PRO-MICROBES: Vision Theme meeting on the Microbiome” Marine Biological Laboratory, Woods Hole, Massachusets, USA \\
2016 & Invited working group participant: NSF Research Coordination Network, "Utilizing ongoing experiments to understand terrestrial ecosystem sensitivity to precipitation change and drought" Sevillleta National Wildlife Refuge, Socorro, New Mexico, USA \\
2015 & Invited workshop participant: “Biocomplexity” Defense Advanced Research Projects Agency (DARPA), Arlington, Virginia, USA \\
2014 & Invited workshop participant: “Advanced analysis of genomic data in microbial ecology research”, National Ecological Observatory Network (NEON), Boulder, Colorado, USA \\
2014 & Invited workshop participant: NSF workshop on the “Ecological implications of synthetic biology”, MIT Center for International Studies and the Woodrow Wilson Center, Emeryville, California, USA\\