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Copy pathuTestModel.pas
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3171 lines (3156 loc) · 236 KB
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unit uTestModel;
interface
const SBML_EXAMPLE_MODELS = 4; // Number of example SBML models listed below
function getTestModel( index: integer ) : string;
implementation
function getTestModel( index: integer) : string;
begin
case index of
0:
result := '<?xml version="1.0" encoding="UTF-8"?>' +
' <!-- Created by libAntimony version v2.12.0.3 with libSBML version 5.18.1. -->' +
' <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" level="3" version="1">' +
' <model metaid="__main" id="__main">' +
' <listOfCompartments>' +
' <compartment sboTerm="SBO:0000410" id="default_compartment" spatialDimensions="3" size="1" constant="true"/>' +
' </listOfCompartments>' +
' <listOfSpecies>' +
' <species id="S1" compartment="default_compartment" initialConcentration="20" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>' +
' <species id="S2" compartment="default_compartment" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>' +
' <species id="S3" compartment="default_compartment" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>' +
' <species id="S4" compartment="default_compartment" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>' +
' </listOfSpecies>' +
' <listOfParameters>' +
' <parameter id="k1" value="0.1" constant="true"/>' +
' <parameter id="k2" value="0.2" constant="true"/>' +
' <parameter id="k3" value="0.1" constant="true"/>' +
' <parameter id="k4" value="0.2" constant="true"/>' +
' </listOfParameters>' +
' <listOfReactions>' +
' <reaction id="J1" reversible="true" fast="false">' +
' <listOfReactants>' +
' <speciesReference species="S1" stoichiometry="1" constant="true"/>' +
' </listOfReactants>' +
' <listOfProducts>' +
' <speciesReference species="S2" stoichiometry="1" constant="true"/>' +
' </listOfProducts>' +
' <kineticLaw>' +
' <math xmlns="http://www.w3.org/1998/Math/MathML">' +
' <apply>' +
' <times/>' +
' <ci> k1 </ci>' +
' <ci> S1 </ci>' +
' </apply>' +
' </math>' +
' </kineticLaw>' +
' </reaction>' +
' <reaction id="J2" reversible="true" fast="false">' +
' <listOfReactants>' +
' <speciesReference species="S2" stoichiometry="1" constant="true"/>' +
' </listOfReactants>' +
' <listOfProducts>' +
' <speciesReference species="S3" stoichiometry="1" constant="true"/>' +
' </listOfProducts>' +
' <kineticLaw>' +
' <math xmlns="http://www.w3.org/1998/Math/MathML">' +
' <apply>' +
' <times/>' +
' <ci> k2 </ci>' +
' <ci> S2 </ci>' +
' </apply>' +
' </math>' +
' </kineticLaw>' +
' </reaction>' +
' <reaction id="J3" reversible="true" fast="false">' +
' <listOfReactants>' +
' <speciesReference species="S3" stoichiometry="1" constant="true"/>' +
' </listOfReactants>' +
' <listOfProducts>' +
' <speciesReference species="S4" stoichiometry="1" constant="true"/>' +
' </listOfProducts>' +
' <kineticLaw>' +
' <math xmlns="http://www.w3.org/1998/Math/MathML">' +
' <apply>' +
' <times/>' +
' <ci> k3 </ci>' +
' <ci> S3 </ci>' +
' </apply>' +
' </math>' +
' </kineticLaw>' +
' </reaction>' +
' <reaction id="J4" reversible="true" fast="false">' +
' <listOfReactants>' +
' <speciesReference species="S4" stoichiometry="1" constant="true"/>' +
' </listOfReactants>' +
' <listOfProducts>' +
' <speciesReference species="S2" stoichiometry="1" constant="true"/>' +
' </listOfProducts>' +
' <kineticLaw>' +
' <math xmlns="http://www.w3.org/1998/Math/MathML">' +
' <apply>' +
' <times/>' +
' <ci> k4 </ci>' +
' <ci> S4 </ci>' +
' </apply>' +
' </math>' +
' </kineticLaw>' +
' </reaction>' +
' </listOfReactions>' +
' </model>' +
' </sbml>';
1:
Result := '<?xml version="1.0" encoding="UTF-8"?>' +
'<sbml xmlns="http://www.sbml.org/sbml/level3/version2/core" xmlns:layout="http://www.sbml.org/sbml/level3/version1/layout/version1" xmlns:render="http://www.sbml.org/sbml/level3/version1/render/version1" level="3" version="2" layout:required="false" render:required="false">' +
'<model id="Feedback_example">' +
'<listOfCompartments>' +
'<compartment id="unit_compartment" size="1" constant="true"/>' +
'</listOfCompartments>' +
'<listOfSpecies>' +
'<species id="X0" compartment="unit_compartment" initialConcentration="10" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false"/>' +
'<species id="S1" compartment="unit_compartment" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>' +
'<species id="S4" compartment="unit_compartment" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>' +
'<species id="S2" compartment="unit_compartment" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>' +
'<species id="S3" compartment="unit_compartment" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>' +
'<species id="X1" compartment="unit_compartment" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false"/>' +
'</listOfSpecies>' +
'<listOfParameters>' +
'<parameter id="VM1" value="10" constant="true"/>' +
'<parameter id="Keq1" value="10" constant="true"/>' +
'<parameter id="h" value="10" constant="true"/>' +
'<parameter id="default_compartment" value="1" constant="false"/>' +
'<parameter id="V4" value="2.5" constant="true"/>' +
'<parameter id="KS4" value="0.5" constant="true"/>' +
'</listOfParameters>' +
'<listOfReactions>' +
'<reaction id="J0" reversible="false" compartment="unit_compartment">' +
'<listOfReactants>' +
'<speciesReference id="X0J0" name="X0" species="X0" stoichiometry="1" constant="true"/>' +
'</listOfReactants>' +
'<listOfProducts>' +
'<speciesReference id="S1J0" name="S1" species="S1" stoichiometry="1" constant="true"/>' +
'</listOfProducts>' +
'<kineticLaw>' +
'<math xmlns="http://www.w3.org/1998/Math/MathML">' +
'<apply>' +
'<divide/>' +
'<apply>' +
'<times/>' +
'<ci> VM1 </ci>' +
'<apply>' +
'<minus/>' +
'<ci> X0 </ci>' +
'<apply>' +
'<divide/>' +
'<ci> S1 </ci>' +
'<ci> Keq1 </ci>' +
'</apply>' +
'</apply>' +
'</apply>' +
'<apply>' +
'<plus/>' +
'<cn type="integer"> 1 </cn>' +
'<ci> X0 </ci>' +
'<ci> S1 </ci>' +
'<apply>' +
'<power/>' +
'<ci> S4 </ci>' +
'<ci> h </ci>' +
'</apply>' +
'</apply>' +
'</apply>' +
'</math>' +
'</kineticLaw>' +
'</reaction>' +
'<reaction id="J1" reversible="false" compartment="unit_compartment">' +
'<listOfReactants>' +
'<speciesReference id="S1J1" name="S1" species="S1" stoichiometry="1" constant="true"/>' +
'</listOfReactants>' +
'<listOfProducts>' +
'<speciesReference id="S2J1" name="S2" species="S2" stoichiometry="1" constant="true"/>' +
'</listOfProducts>' +
'<kineticLaw>' +
'<math xmlns="http://www.w3.org/1998/Math/MathML">' +
'<apply>' +
'<divide/>' +
'<apply>' +
'<minus/>' +
'<apply>' +
'<times/>' +
'<cn type="integer"> 10 </cn>' +
'<ci> S1 </ci>' +
'</apply>' +
'<apply>' +
'<times/>' +
'<cn type="integer"> 2 </cn>' +
'<ci> S2 </ci>' +
'</apply>' +
'</apply>' +
'<apply>' +
'<plus/>' +
'<cn type="integer"> 1 </cn>' +
'<ci> S1 </ci>' +
'<ci> S2 </ci>' +
'</apply>' +
'</apply>' +
'</math>' +
'</kineticLaw>' +
'</reaction>' +
'<reaction id="J2" reversible="false" compartment="unit_compartment">' +
'<listOfReactants>' +
'<speciesReference id="S2J2" name="S2" species="S2" stoichiometry="1" constant="true"/>' +
'</listOfReactants>' +
'<listOfProducts>' +
'<speciesReference id="S3J2" name="S3" species="S3" stoichiometry="1" constant="true"/>' +
'</listOfProducts>' +
'<kineticLaw>' +
'<math xmlns="http://www.w3.org/1998/Math/MathML">' +
'<apply>' +
'<divide/>' +
'<apply>' +
'<minus/>' +
'<apply>' +
'<times/>' +
'<cn type="integer"> 10 </cn>' +
'<ci> S2 </ci>' +
'</apply>' +
'<apply>' +
'<times/>' +
'<cn type="integer"> 2 </cn>' +
'<ci> S3 </ci>' +
'</apply>' +
'</apply>' +
'<apply>' +
'<plus/>' +
'<cn type="integer"> 1 </cn>' +
'<ci> S2 </ci>' +
'<ci> S3 </ci>' +
'</apply>' +
'</apply>' +
'</math>' +
'</kineticLaw>' +
'</reaction>' +
'<reaction id="J3" reversible="false" compartment="unit_compartment">' +
'<listOfReactants>' +
'<speciesReference id="S3J3" name="S3" species="S3" stoichiometry="1" constant="true"/>' +
'</listOfReactants>' +
'<listOfProducts>' +
'<speciesReference id="S4J3" name="S4" species="S4" stoichiometry="1" constant="true"/>' +
'</listOfProducts>' +
'<kineticLaw>' +
'<math xmlns="http://www.w3.org/1998/Math/MathML">' +
'<apply>' +
'<divide/>' +
'<apply>' +
'<minus/>' +
'<apply>' +
'<times/>' +
'<cn type="integer"> 10 </cn>' +
'<ci> S3 </ci>' +
'</apply>' +
'<apply>' +
'<times/>' +
'<cn type="integer"> 2 </cn>' +
'<ci> S4 </ci>' +
'</apply>' +
'</apply>' +
'<apply>' +
'<plus/>' +
'<cn type="integer"> 1 </cn>' +
'<ci> S3 </ci>' +
'<ci> S4 </ci>' +
'</apply>' +
'</apply>' +
'</math>' +
'</kineticLaw>' +
'</reaction>' +
'<reaction id="J4" reversible="false" compartment="unit_compartment">' +
'<listOfReactants>' +
'<speciesReference id="S4J4" name="S4" species="S4" stoichiometry="1" constant="true"/>' +
'</listOfReactants>' +
'<listOfProducts>' +
'<speciesReference id="X1J4" name="X1" species="X1" stoichiometry="1" constant="true"/>' +
'</listOfProducts>' +
'<kineticLaw>' +
'<math xmlns="http://www.w3.org/1998/Math/MathML">' +
'<apply>' +
'<divide/>' +
'<apply>' +
'<times/>' +
'<ci> V4 </ci>' +
'<ci> S4 </ci>' +
'</apply>' +
'<apply>' +
'<plus/>' +
'<ci> KS4 </ci>' +
'<ci> S4 </ci>' +
'</apply>' +
'</apply>' +
'</math>' +
'</kineticLaw>' +
'</reaction>' +
'</listOfReactions>' +
'<layout:listOfLayouts xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:layout="http://www.sbml.org/sbml/level3/version1/layout/version1">' +
'<layout:layout layout:id="layouttestNetwork">' +
'<layout:dimensions layout:width="863" layout:height="636"/>' +
'<layout:listOfSpeciesGlyphs>' +
'<layout:speciesGlyph layout:id="speciesGlyphX0" layout:species="X0">' +
'<layout:boundingBox>' +
'<layout:position layout:x="204.808629732497" layout:y="192.5"/>' +
'<layout:dimensions layout:width="60" layout:height="40"/>' +
'</layout:boundingBox>' +
'</layout:speciesGlyph>' +
'<layout:speciesGlyph layout:id="speciesGlyphS1" layout:species="S1">' +
'<layout:boundingBox>' +
'<layout:position layout:x="170.563342861622" layout:y="336.5"/>' +
'<layout:dimensions layout:width="60" layout:height="40"/>' +
'</layout:boundingBox>' +
'</layout:speciesGlyph>' +
'<layout:speciesGlyph layout:id="speciesGlyphS4" layout:species="S4">' +
'<layout:boundingBox>' +
'<layout:position layout:x="659.865504755851" layout:y="253.5"/>' +
'<layout:dimensions layout:width="60" layout:height="40"/>' +
'</layout:boundingBox>' +
'</layout:speciesGlyph>' +
'<layout:speciesGlyph layout:id="speciesGlyphS2" layout:species="S2">' +
'<layout:boundingBox>' +
'<layout:position layout:x="334.903954537822" layout:y="388.5"/>' +
'<layout:dimensions layout:width="60" layout:height="40"/>' +
'</layout:boundingBox>' +
'</layout:speciesGlyph>' +
'<layout:speciesGlyph layout:id="speciesGlyphS3" layout:species="S3">' +
'<layout:boundingBox>' +
'<layout:position layout:x="515.817311698465" layout:y="331.5"/>' +
'<layout:dimensions layout:width="60" layout:height="40"/>' +
'</layout:boundingBox>' +
'</layout:speciesGlyph>' +
'<layout:speciesGlyph layout:id="speciesGlyphX1" layout:species="X1">' +
'<layout:boundingBox>' +
'<layout:position layout:x="703.041256413743" layout:y="405.5"/>' +
'<layout:dimensions layout:width="60" layout:height="40"/>' +
'</layout:boundingBox>' +
'</layout:speciesGlyph>' +
'</layout:listOfSpeciesGlyphs>' +
'<layout:listOfReactionGlyphs>' +
'<layout:reactionGlyph layout:id="reactionGlyphJ0" layout:reaction="J0">' +
'<layout:curve>' +
'<layout:listOfCurveSegments>' +
'<layout:curveSegment xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="LineSegment">' +
'<layout:start layout:x="217.685986297059" layout:y="284.5"/>' +
'<layout:end layout:x="217.685986297059" layout:y="284.5"/>' +
'</layout:curveSegment>' +
'</layout:listOfCurveSegments>' +
'</layout:curve>' +
'<layout:listOfSpeciesReferenceGlyphs>' +
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'<render:g render:text-anchor="middle" render:vtext-anchor="middle" render:font-size="12"/>' +
'</render:style>' +
'<render:style render:id="speciesStyle_S2" render:idList="speciesGlyphS2">' +
'<render:g render:stroke="outlineColorSpecies_speciesGlyphS2" render:stroke-width="3" render:fill="fillColorSpecies_speciesGlyphS2" render:text-anchor="middle" render:vtext-anchor="middle">' +
'<render:rectangle render:x="0" render:y="0" render:width="60" render:height="40" render:rx="24%" render:ry="24%"/>' +
'</render:g>' +
'</render:style>' +
'<render:style render:id="textStyle_S2" render:typeList="TEXTGLYPH">' +
'<render:g render:text-anchor="middle" render:vtext-anchor="middle" render:font-size="12"/>' +
'</render:style>' +
'<render:style render:id="speciesStyle_S3" render:idList="speciesGlyphS3">' +
'<render:g render:stroke="outlineColorSpecies_speciesGlyphS3" render:stroke-width="3" render:fill="fillColorSpecies_speciesGlyphS3" render:text-anchor="middle" render:vtext-anchor="middle">' +
'<render:rectangle render:x="0" render:y="0" render:width="60" render:height="40" render:rx="24%" render:ry="24%"/>' +
'</render:g>' +
'</render:style>' +
'<render:style render:id="textStyle_S3" render:typeList="TEXTGLYPH">' +
'<render:g render:text-anchor="middle" render:vtext-anchor="middle" render:font-size="12"/>' +
'</render:style>' +
'<render:style render:id="speciesStyle_X1" render:idList="speciesGlyphX1">' +
'<render:g render:stroke="outlineColorSpecies_speciesGlyphX1" render:stroke-width="3" render:fill="fillColorSpecies_speciesGlyphX1" render:text-anchor="middle" render:vtext-anchor="middle">' +
'<render:rectangle render:x="0" render:y="0" render:width="60" render:height="40" render:rx="24%" render:ry="24%"/>' +
'</render:g>' +
'</render:style>' +
'<render:style render:id="textStyle_X1" render:typeList="TEXTGLYPH">' +
'<render:g render:text-anchor="middle" render:vtext-anchor="middle" render:font-size="12"/>' +
'</render:style>' +
'<render:style render:id="reaction_reactant_Style_J0" render:roleList="reactant" render:idList="specRefGlyphX0J0">' +
'<render:g render:stroke="fillColorReaction_specRefGlyphX0J0" render:stroke-width="3" render:fill="fillColorReaction_specRefGlyphX0J0" render:text-anchor="middle" render:vtext-anchor="middle"/>' +
'</render:style>' +
'<render:style render:id="reaction_product_Style_J0" render:roleList="product" render:idList="specRefGlyphS1J0">' +
'<render:g render:stroke="fillColorReaction_specRefGlyphS1J0" render:stroke-width="3" render:fill="fillColorReaction_specRefGlyphS1J0" render:endHead="arrowHead_productJ0" render:text-anchor="middle" render:vtext-anchor="middle"/>' +
'</render:style>' +
'<render:style render:id="reaction_reactant_Style_J1" render:roleList="reactant" render:idList="specRefGlyphS1J1">' +
'<render:g render:stroke="fillColorReaction_specRefGlyphS1J1" render:stroke-width="3" render:fill="fillColorReaction_specRefGlyphS1J1" render:text-anchor="middle" render:vtext-anchor="middle"/>' +
'</render:style>' +
'<render:style render:id="reaction_product_Style_J1" render:roleList="product" render:idList="specRefGlyphS2J1">' +
'<render:g render:stroke="fillColorReaction_specRefGlyphS2J1" render:stroke-width="3" render:fill="fillColorReaction_specRefGlyphS2J1" render:endHead="arrowHead_productJ1" render:text-anchor="middle" render:vtext-anchor="middle"/>' +
'</render:style>' +
'<render:style render:id="reaction_reactant_Style_J2" render:roleList="reactant" render:idList="specRefGlyphS2J2">' +
'<render:g render:stroke="fillColorReaction_specRefGlyphS2J2" render:stroke-width="3" render:fill="fillColorReaction_specRefGlyphS2J2" render:text-anchor="middle" render:vtext-anchor="middle"/>' +
'</render:style>' +
'<render:style render:id="reaction_product_Style_J2" render:roleList="product" render:idList="specRefGlyphS3J2">' +
'<render:g render:stroke="fillColorReaction_specRefGlyphS3J2" render:stroke-width="3" render:fill="fillColorReaction_specRefGlyphS3J2" render:endHead="arrowHead_productJ2" render:text-anchor="middle" render:vtext-anchor="middle"/>' +
'</render:style>' +
'<render:style render:id="reaction_reactant_Style_J3" render:roleList="reactant" render:idList="specRefGlyphS3J3">' +
'<render:g render:stroke="fillColorReaction_specRefGlyphS3J3" render:stroke-width="3" render:fill="fillColorReaction_specRefGlyphS3J3" render:text-anchor="middle" render:vtext-anchor="middle"/>' +
'</render:style>' +
'<render:style render:id="reaction_product_Style_J3" render:roleList="product" render:idList="specRefGlyphS4J3">' +
'<render:g render:stroke="fillColorReaction_specRefGlyphS4J3" render:stroke-width="3" render:fill="fillColorReaction_specRefGlyphS4J3" render:endHead="arrowHead_productJ3" render:text-anchor="middle" render:vtext-anchor="middle"/>' +
'</render:style>' +
'<render:style render:id="reaction_reactant_Style_J4" render:roleList="reactant" render:idList="specRefGlyphS4J4">' +
'<render:g render:stroke="fillColorReaction_specRefGlyphS4J4" render:stroke-width="3" render:fill="fillColorReaction_specRefGlyphS4J4" render:text-anchor="middle" render:vtext-anchor="middle"/>' +
'</render:style>' +
'<render:style render:id="reaction_product_Style_J4" render:roleList="product" render:idList="specRefGlyphX1J4">' +
'<render:g render:stroke="fillColorReaction_specRefGlyphX1J4" render:stroke-width="3" render:fill="fillColorReaction_specRefGlyphX1J4" render:endHead="arrowHead_productJ4" render:text-anchor="middle" render:vtext-anchor="middle"/>' +
'</render:style>' +
'</render:listOfStyles>' +
'</render:renderInformation>' +
'</render:listOfRenderInformation>' +
'</layout:layout>' +
'</layout:listOfLayouts>' +
'</model>' +
'</sbml>' ;
2:
Result := '<?xml version="1.0" encoding="UTF-8"?>' +
'<sbml xmlns="http://www.sbml.org/sbml/level3/version2/core" xmlns:layout="http://www.sbml.org/sbml/level3/version1/layout/version1" xmlns:render="http://www.sbml.org/sbml/level3/version1/render/version1" level="3" version="2" layout:required="false" render:required="false">' +
'<model>' +
'<listOfCompartments>' +
'<compartment id="unit_compartment" size="1" constant="true"/>' +
'</listOfCompartments>' +
'<listOfSpecies>' +
'<species id="Z" compartment="unit_compartment" initialConcentration="0.15" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>' +
'<species id="Y" compartment="unit_compartment" initialConcentration="1.6" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>' +
'<species id="R0_Null" compartment="unit_compartment" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false"/>' +
'<species id="R1_Null" compartment="unit_compartment" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false"/>' +
'<species id="R_eff_Null" compartment="unit_compartment" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false"/>' +
'</listOfSpecies>' +
'<listOfParameters>' +
'<parameter id="v0" value="1" constant="true"/>' +
'<parameter id="cytosol" value="1" constant="false"/>' +
'<parameter id="store" value="1" constant="false"/>' +
'<parameter id="v1" value="7.3" constant="true"/>' +
'<parameter id="beta" value="0.301" constant="true"/>' +
'<parameter id="Vm2" value="65" constant="true"/>' +
'<parameter id="n" value="2" constant="true"/>' +
'<parameter id="K2" value="1" constant="true"/>' +
'<parameter id="m" value="2" constant="true"/>' +
'<parameter id="p" value="4" constant="true"/>' +
'<parameter id="Vm3" value="500" constant="true"/>' +
'<parameter id="Kr" value="2" constant="true"/>' +
'<parameter id="Ka" value="0.9" constant="true"/>' +
'<parameter id="kf" value="1" constant="true"/>' +
'<parameter id="k" value="10" constant="true"/>' +
'</listOfParameters>' +
'<listOfReactions>' +
'<reaction id="R0" reversible="false" compartment="unit_compartment">' +
'<listOfReactants>' +
'<speciesReference id="R0_NullR0" name="R0_Null" species="R0_Null" constant="true"/>' +
'</listOfReactants>' +
'<listOfProducts>' +
'<speciesReference id="ZR0" name="Z" species="Z" stoichiometry="1" constant="true"/>' +
'</listOfProducts>' +
'<kineticLaw>' +
'<math xmlns="http://www.w3.org/1998/Math/MathML">' +
'<apply>' +
'<times/>' +
'<ci> cytosol </ci>' +
'<ci> v0 </ci>' +
'</apply>' +
'</math>' +
'</kineticLaw>' +
'</reaction>' +
'<reaction id="R1" reversible="false" compartment="unit_compartment">' +
'<listOfReactants>' +
'<speciesReference id="R1_NullR1" name="R1_Null" species="R1_Null" constant="true"/>' +
'</listOfReactants>' +
'<listOfProducts>' +
'<speciesReference id="ZR1" name="Z" species="Z" stoichiometry="1" constant="true"/>' +
'</listOfProducts>' +
'<kineticLaw>' +
'<math xmlns="http://www.w3.org/1998/Math/MathML">' +
'<apply>' +
'<times/>' +
'<ci> cytosol </ci>' +
'<ci> v1 </ci>' +
'<ci> beta </ci>' +
'</apply>' +
'</math>' +
'</kineticLaw>' +
'</reaction>' +
'<reaction id="R2" reversible="false" compartment="unit_compartment">' +
'<listOfReactants>' +
'<speciesReference id="ZR2" name="Z" species="Z" stoichiometry="1" constant="true"/>' +
'</listOfReactants>' +
'<listOfProducts>' +
'<speciesReference id="YR2" name="Y" species="Y" stoichiometry="1" constant="true"/>' +
'</listOfProducts>' +
'<kineticLaw>' +
'<math xmlns="http://www.w3.org/1998/Math/MathML">' +
'<apply>' +
'<times/>' +
'<ci> cytosol </ci>' +
'<apply>' +
'<divide/>' +
'<apply>' +
'<times/>' +
'<ci> Vm2 </ci>' +
'<apply>' +
'<power/>' +
'<ci> Z </ci>' +
'<ci> n </ci>' +
'</apply>' +
'</apply>' +
'<apply>' +
'<plus/>' +
'<apply>' +
'<power/>' +
'<ci> K2 </ci>' +
'<ci> n </ci>' +
'</apply>' +
'<apply>' +
'<power/>' +
'<ci> Z </ci>' +
'<ci> n </ci>' +
'</apply>' +
'</apply>' +
'</apply>' +
'</apply>' +
'</math>' +
'</kineticLaw>' +
'</reaction>' +
'<reaction id="R3" reversible="false" compartment="unit_compartment">' +
'<listOfReactants>' +
'<speciesReference id="YR3" name="Y" species="Y" stoichiometry="1" constant="true"/>' +
'</listOfReactants>' +
'<listOfProducts>' +
'<speciesReference id="ZR3" name="Z" species="Z" stoichiometry="1" constant="true"/>' +
'</listOfProducts>' +
'<kineticLaw>' +
'<math xmlns="http://www.w3.org/1998/Math/MathML">' +
'<apply>' +
'<times/>' +
'<ci> store </ci>' +
'<apply>' +
'<divide/>' +
'<apply>' +
'<times/>' +
'<ci> Vm3 </ci>' +
'<apply>' +
'<power/>' +
'<ci> Y </ci>' +
'<ci> m </ci>' +
'</apply>' +
'<apply>' +
'<power/>' +
'<ci> Z </ci>' +
'<ci> p </ci>' +
'</apply>' +
'</apply>' +
'<apply>' +
'<times/>' +
'<apply>' +
'<plus/>' +
'<apply>' +
'<power/>' +
'<ci> Kr </ci>' +
'<ci> m </ci>' +
'</apply>' +
'<apply>' +
'<power/>' +
'<ci> Y </ci>' +
'<ci> m </ci>' +
'</apply>' +
'</apply>' +
'<apply>' +
'<plus/>' +
'<apply>' +
'<power/>' +
'<ci> Ka </ci>' +
'<ci> p </ci>' +
'</apply>' +
'<apply>' +
'<power/>' +
'<ci> Z </ci>' +
'<ci> p </ci>' +
'</apply>' +
'</apply>' +
'</apply>' +
'</apply>' +
'</apply>' +
'</math>' +
'</kineticLaw>' +
'</reaction>' +
'<reaction id="Rf" reversible="false" compartment="unit_compartment">' +
'<listOfReactants>' +
'<speciesReference id="YRf" name="Y" species="Y" stoichiometry="1" constant="true"/>' +
'</listOfReactants>' +
'<listOfProducts>' +
'<speciesReference id="ZRf" name="Z" species="Z" stoichiometry="1" constant="true"/>' +
'</listOfProducts>' +
'<kineticLaw>' +
'<math xmlns="http://www.w3.org/1998/Math/MathML">' +
'<apply>' +
'<times/>' +
'<ci> store </ci>' +
'<ci> kf </ci>' +
'<ci> Y </ci>' +
'</apply>' +
'</math>' +
'</kineticLaw>' +
'</reaction>' +
'<reaction id="R_eff" reversible="false" compartment="unit_compartment">' +
'<listOfReactants>' +
'<speciesReference id="ZR_eff" name="Z" species="Z" stoichiometry="1" constant="true"/>' +
'</listOfReactants>' +
'<listOfProducts>' +
'<speciesReference id="R_eff_NullR_eff" name="R_eff_Null" species="R_eff_Null" constant="true"/>' +
'</listOfProducts>' +
'<kineticLaw>' +
'<math xmlns="http://www.w3.org/1998/Math/MathML">' +
'<apply>' +
'<times/>' +
'<ci> cytosol </ci>' +
'<ci> k </ci>' +
'<ci> Z </ci>' +
'</apply>' +
'</math>' +
'</kineticLaw>' +
'</reaction>' +
'</listOfReactions>' +
'<layout:listOfLayouts xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:layout="http://www.sbml.org/sbml/level3/version1/layout/version1">' +
'<layout:layout layout:id="layouttestNetwork">' +
'<layout:dimensions layout:width="987" layout:height="636"/>' +
'<layout:listOfSpeciesGlyphs>' +
'<layout:speciesGlyph layout:id="speciesGlyphZ" layout:species="Z">' +
'<layout:boundingBox>' +
'<layout:position layout:x="500.012771956977" layout:y="277.3"/>' +
'<layout:dimensions layout:width="60" layout:height="40"/>' +
'</layout:boundingBox>' +
'</layout:speciesGlyph>' +
'<layout:speciesGlyph layout:id="speciesGlyphY" layout:species="Y">' +
'<layout:boundingBox>' +
'<layout:position layout:x="568.380844366125" layout:y="169.3"/>' +
'<layout:dimensions layout:width="60" layout:height="40"/>' +
'</layout:boundingBox>' +
'</layout:speciesGlyph>' +
'<layout:speciesGlyph layout:id="speciesGlyphR0_Null" layout:species="R0_Null">' +
'<layout:boundingBox>' +
'<layout:position layout:x="325.656306996162" layout:y="160.3"/>' +
'<layout:dimensions layout:width="60" layout:height="40"/>' +
'</layout:boundingBox>' +
'</layout:speciesGlyph>' +
'<layout:speciesGlyph layout:id="speciesGlyphR1_Null" layout:species="R1_Null">' +
'<layout:boundingBox>' +
'<layout:position layout:x="388.703523066882" layout:y="456.3"/>' +
'<layout:dimensions layout:width="60" layout:height="40"/>' +
'</layout:boundingBox>' +
'</layout:speciesGlyph>' +
'<layout:speciesGlyph layout:id="speciesGlyphR_eff_Null" layout:species="R_eff_Null">' +
'<layout:boundingBox>' +
'<layout:position layout:x="684.746553613855" layout:y="384.3"/>' +
'<layout:dimensions layout:width="67.1" layout:height="40"/>' +
'</layout:boundingBox>' +
'</layout:speciesGlyph>' +
'</layout:listOfSpeciesGlyphs>' +
'<layout:listOfReactionGlyphs>' +
'<layout:reactionGlyph layout:id="reactionGlyphR0" layout:reaction="R0">' +
'<layout:curve>' +