Update metadata with corrected filenames

Author: lahuuki

inst/extdata/metadata_LFF_spatial_ERC.csv

@@ -1,9 +1,9 @@
-"Title","Description","BiocVersion","Genome","SourceType","SourceUrl","SourceVersion","Species","TaxonomyId","Coordinate_1_based","DataProvider","Maintainer","RDataClass","DispatchClass","RDataPath","Tags"
-"LFF_spatial_ERC_SRT","SpatialExperiment object at the spot-level for the LFF_spatial_ERC human brain (ERC) spatial transcriptomics data (n = 31) from the Visium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.","3.17","GRCh38","GTF","https://bioconductor.org/packages/spatialLIBD","Nov 20 2025","Homo sapiens",9606,TRUE,"LIBD","Leonardo Collado-Torres <[email protected]>","SpatialExperiment","FilePath","spatialLIBD/spatialLIBD_files/spe_ERC_annotated.zip","Visium_snRNAseq_AD_Alzheimer_Disease_APOE_ERC_spatialLIBD"
-"LFF_spatial_ERC_SRT_pseudobulk","Pseudo-bulked SingleCellExperiment object (SpatialExperiment object without spatial data) at the Sp09D spatial domain resolution for the LFF_spatial_ERC human brain (ERC) spatial transcriptomics data (n = 31) from the Visium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.","3.17","GRCh38","GTF","https://bioconductor.org/packages/spatialLIBD","Nov 20 2025","Homo sapiens",9606,TRUE,"LIBD","Leonardo Collado-Torres <[email protected]>","SingleCellExperiment","Rds","spatialLIBD/spatialLIBD_files/spe_pseudobulk-SpD.rds","Visium_snRNAseq_AD_Alzheimer_Disease_APOE_ERC_spatialLIBD"
-"LFF_spatial_ERC_SRT_modeling_results","List of modeling results at the Sp09D spatial domain resolution for the LFF_spatial_ERC human brain (ERC) spatial transcriptomics data (n = 30) from the Visium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.","3.17","GRCh38","GTF","https://bioconductor.org/packages/spatialLIBD","Nov 20 2025","Homo sapiens",9606,TRUE,"LIBD","Leonardo Collado-Torres <[email protected]>","list","Rds","spatialLIBD/spatialLIBD_files/modeling_results-SpD.rds","Visium_snRNAseq_AD_Alzheimer_Disease_APOE_ERC_spatialLIBD"
-"LFF_spatial_ERC_snRNAseq","SingleCellExperiment object for the LFF_spatial_ERC human brain (ERC) single nucleus transcriptomics data (snRNA-seq, n = 31) from the Chromium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.","3.17","GRCh38","GTF","https://bioconductor.org/packages/spatialLIBD","Nov 20 2025","Homo sapiens",9606,TRUE,"LIBD","Leonardo Collado-Torres <[email protected]>","SingleCellExperiment","FilePath","spatialLIBD/spatialLIBD_files/sce_ERC_subcluster.zip","Visium_snRNAseq_AD_Alzheimer_Disease_APOE_ERC_spatialLIBD"
-"LFF_spatial_ERC_snRNAseq_pseudobulk_broad","Pseudo-bulked SingleCellExperiment object LFF_spatial_ERC human brain (ERC) snRNA-seq data (n = 31) at 9 broad cell type resolution, from the Chromium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.","3.17","GRCh38","GTF","https://bioconductor.org/packages/spatialLIBD","Nov 20 2025","Homo sapiens",9606,TRUE,"LIBD","Leonardo Collado-Torres <[email protected]>","SingleCellExperiment","Rds","spatialLIBD/spatialLIBD_files/sce_subcluster_pseudobulk-cell_type_broad.rds","Visium_snRNAseq_AD_Alzheimer_Disease_APOE_ERC_spatialLIBD"
-"LFF_spatial_ERC_snRNAseq_pseudobulk_subcluster","Pseudo-bulked SingleCellExperiment object LFF_spatial_ERC human brain (ERC) snRNA-seq data (n = 31) at 38 subcluster resolution, from the Chromium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.","3.17","GRCh38","GTF","https://bioconductor.org/packages/spatialLIBD","Nov 20 2025","Homo sapiens",9606,TRUE,"LIBD","Leonardo Collado-Torres <[email protected]>","SingleCellExperiment","Rds","spatialLIBD/spatialLIBD_files/sce_subcluster_pseudobulk-cell_type_anno.rds","Visium_snRNAseq_AD_Alzheimer_Disease_APOE_ERC_spatialLIBD"
-"LFF_spatial_ERC_snRNAseq_modeling_results_broad","List of modeling results at the 9 broad cell type resolution for the LFF_spatial_ERC human brain (ERC) for snRNA-seq (n = 31) from the Chromium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.","3.17","GRCh38","GTF","https://bioconductor.org/packages/spatialLIBD","Nov 20 2025","Homo sapiens",9606,TRUE,"LIBD","Leonardo Collado-Torres <[email protected]>","list","Rds","spatialLIBD/spatialLIBD_files/sce_subcluster_pseudobulk-cell_type_broad.rds","Visium_snRNAseq_AD_Alzheimer_Disease_APOE_ERC_spatialLIBD"
-"LFF_spatial_ERC_snRNAseq_modeling_results_subcluster","List of modeling results at the 38 subcluster resolution for the LFF_spatial_ERC human brain (ERC) for snRNA-seq (n = 31) from the Chromium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.","3.17","GRCh38","GTF","https://bioconductor.org/packages/spatialLIBD","Nov 20 2025","Homo sapiens",9606,TRUE,"LIBD","Leonardo Collado-Torres <[email protected]>","list","Rds","spatialLIBD/spatialLIBD_files/sce_subcluster_modeling_results-cell_type_anno.rds","Visium_snRNAseq_AD_Alzheimer_Disease_APOE_ERC_spatialLIBD"
+Title,Description,BiocVersion,Genome,SourceType,SourceUrl,SourceVersion,Species,TaxonomyId,Coordinate_1_based,DataProvider,Maintainer,RDataClass,DispatchClass,RDataPath,Tags
+LFF_spatial_ERC_SRT,SpatialExperiment object at the spot-level for the LFF_spatial_ERC human brain (ERC) spatial transcriptomics data (n = 31) from the Visium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.,3.17,GRCh38,GTF,https://bioconductor.org/packages/spatialLIBD,Nov 20 2025,Homo sapiens,9606,TRUE,LIBD,Leonardo Collado-Torres <[email protected]>,SpatialExperiment,FilePath,spatialLIBD/spatialLIBD_files/spe_ERC_annotated.zip,Visium_snRNAseq_AD_Alzheimer_Disease_APOE_ERC_spatialLIBD
+LFF_spatial_ERC_SRT_pseudobulk,Pseudo-bulked SingleCellExperiment object (SpatialExperiment object without spatial data) at the Sp09D spatial domain resolution for the LFF_spatial_ERC human brain (ERC) spatial transcriptomics data (n = 31) from the Visium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.,3.17,GRCh38,GTF,https://bioconductor.org/packages/spatialLIBD,Nov 20 2025,Homo sapiens,9606,TRUE,LIBD,Leonardo Collado-Torres <[email protected]>,SingleCellExperiment,Rds,spatialLIBD/spatialLIBD_files/spe_pseudobulk-SpD.rds,Visium_snRNAseq_AD_Alzheimer_Disease_APOE_ERC_spatialLIBD
+LFF_spatial_ERC_SRT_modeling_results,List of modeling results at the Sp09D spatial domain resolution for the LFF_spatial_ERC human brain (ERC) spatial transcriptomics data (n = 30) from the Visium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.,3.17,GRCh38,GTF,https://bioconductor.org/packages/spatialLIBD,Nov 20 2025,Homo sapiens,9606,TRUE,LIBD,Leonardo Collado-Torres <[email protected]>,list,Rds,spatialLIBD/spatialLIBD_files/modeling_results-SpD.rds,Visium_snRNAseq_AD_Alzheimer_Disease_APOE_ERC_spatialLIBD
+LFF_spatial_ERC_snRNAseq,"SingleCellExperiment object for the LFF_spatial_ERC human brain (ERC) single nucleus transcriptomics data (snRNA-seq, n = 31) from the Chromium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.",3.17,GRCh38,GTF,https://bioconductor.org/packages/spatialLIBD,Nov 20 2025,Homo sapiens,9606,TRUE,LIBD,Leonardo Collado-Torres <[email protected]>,SingleCellExperiment,FilePath,spatialLIBD/spatialLIBD_files/sce_ERC_subcluster.zip,Visium_snRNAseq_AD_Alzheimer_Disease_APOE_ERC_spatialLIBD
+LFF_spatial_ERC_snRNAseq_pseudobulk_broad,"Pseudo-bulked SingleCellExperiment object LFF_spatial_ERC human brain (ERC) snRNA-seq data (n = 31) at 9 broad cell type resolution, from the Chromium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.",3.17,GRCh38,GTF,https://bioconductor.org/packages/spatialLIBD,Nov 20 2025,Homo sapiens,9606,TRUE,LIBD,Leonardo Collado-Torres <[email protected]>,SingleCellExperiment,Rds,spatialLIBD/spatialLIBD_files/sce_pseudo_DGE-cell_type_broad.RDS,Visium_snRNAseq_AD_Alzheimer_Disease_APOE_ERC_spatialLIBD
+LFF_spatial_ERC_snRNAseq_pseudobulk_subcluster,"Pseudo-bulked SingleCellExperiment object LFF_spatial_ERC human brain (ERC) snRNA-seq data (n = 31) at 38 subcluster resolution, from the Chromium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.",3.17,GRCh38,GTF,https://bioconductor.org/packages/spatialLIBD,Nov 20 2025,Homo sapiens,9606,TRUE,LIBD,Leonardo Collado-Torres <[email protected]>,SingleCellExperiment,Rds,spatialLIBD/spatialLIBD_files/sce_pseudo_DGE-cell_type_anno.RDS,Visium_snRNAseq_AD_Alzheimer_Disease_APOE_ERC_spatialLIBD
+LFF_spatial_ERC_snRNAseq_modeling_results_broad,List of modeling results at the 9 broad cell type resolution for the LFF_spatial_ERC human brain (ERC) for snRNA-seq (n = 31) from the Chromium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.,3.17,GRCh38,GTF,https://bioconductor.org/packages/spatialLIBD,Nov 20 2025,Homo sapiens,9606,TRUE,LIBD,Leonardo Collado-Torres <[email protected]>,list,Rds,spatialLIBD/spatialLIBD_files/sce_subcluster_pseudobulk-cell_type_broad.rds,Visium_snRNAseq_AD_Alzheimer_Disease_APOE_ERC_spatialLIBD
+LFF_spatial_ERC_snRNAseq_modeling_results_subcluster,List of modeling results at the 38 subcluster resolution for the LFF_spatial_ERC human brain (ERC) for snRNA-seq (n = 31) from the Chromium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.,3.17,GRCh38,GTF,https://bioconductor.org/packages/spatialLIBD,Nov 20 2025,Homo sapiens,9606,TRUE,LIBD,Leonardo Collado-Torres <[email protected]>,list,Rds,spatialLIBD/spatialLIBD_files/sce_subcluster_modeling_results-cell_type_anno.rds,Visium_snRNAseq_AD_Alzheimer_Disease_APOE_ERC_spatialLIBD