Change to use check suggested at https://blog.bioconductor.org/posts/2025-07-07-ggplot2-update/

lcolladotor · lcolladotor · commit b7bae6f59c9b · 2025-09-26T09:40:00.000-04:00
diff --git a/tests/testthat/test-vis_gene.R b/tests/testthat/test-vis_gene.R
@@ -46,11 +46,8 @@ test_that("vis_gene", {
 
     #   Trivially check success with legitimate input
     expect_true(
-        all(
-            c("gg", "ggplot") %in%
-                class(
-                    vis_gene(spe, geneid = c("sum_umi", rownames(spe)[1]))
-                )
+        ggplot2::is_ggplot(
+            vis_gene(spe, geneid = c("sum_umi", rownames(spe)[1]))
         )
     )
 

Original file line number	Diff line number	Diff line change
`@@ -46,11 +46,8 @@ test_that("vis_gene", {`
`46`	`46`
`47`	`47`	`# Trivially check success with legitimate input`
`48`	`48`	`expect_true(`
`49`		`- all(`
`50`		`- c("gg", "ggplot") %in%`
`51`		`- class(`
`52`		`- vis_gene(spe, geneid = c("sum_umi", rownames(spe)[1]))`
`53`		`- )`
	`49`	`+ ggplot2::is_ggplot(`
	`50`	`+ vis_gene(spe, geneid = c("sum_umi", rownames(spe)[1]))`
`54`	`51`	`)`
`55`	`52`	`)`
`56`	`53`