Commit c82c789
committed
Fix bug on the "clusters (interactive)" tab of run_app() for stitched data.
I used this code to debug things:
```R
library("HDF5Array")
spe <- loadHDF5SummarizedExperiment('/Users/leocollado/Dropbox/Code/_libdcode/visiumStitched_brain/code/05_shiny/spe')
vars <- colnames(colData(spe))
run_app(
spe,
sce_layer = NULL,
modeling_results = NULL,
sig_genes = NULL,
title = "visiumStitched_brain",
spe_discrete_vars = c(
"ManualAnnotation",
vars[grep("^precast_k[248]$", vars)],
"scran_quick_cluster"
),
spe_continuous_vars = c(
"sum_umi",
"sum_gene",
"expr_chrM",
"expr_chrM_ratio"
),
default_cluster = "precast_k2",
docs_path = "/Users/leocollado/Dropbox/Code/_libdcode/visiumStitched_brain/code/05_shiny/www",
is_stitched = TRUE
)
```1 parent ace59fa commit c82c789
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