Update spikeinterface version (#852)

khl02007 · edeno · web-flow · commit a68916292bff · 2024-03-07T14:59:40.000-08:00
* Save LFP as pynwb.ecephys.LFP

* Fix formatting

* Fix formatting

* Update spikeinterface version

* Update changelog

* Fix CurationV1 get_sorting

* Remove release note

---------

Co-authored-by: Eric Denovellis &lt;edeno@bu.edu&gt;
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -18,6 +18,7 @@
     - Replace deprecated calls to `yaml.safe_load()` #834
 
 - Spikesorting:
+    - Increase the required `spikeinterface` version to >=0.99.1 for `get_sorting` method associated with `SpikeSorting` and `CurationV1` tables in spike sorting V1 pipeline. Limit version to <0.100 in case there are other issues with it. #852
     - Bug fix in single artifact interval edge case #859
 
 ## [0.5.0] (February 9, 2024)
diff --git a/environment.yml b/environment.yml
@@ -46,5 +46,5 @@ dependencies:
       - pubnub<=6.4.0
       - pynwb>=2.2.0,<3
       - sortingview>=0.11
-      - spikeinterface>=0.98.2,<0.99
+      - spikeinterface>=0.99.1,<0.100
       - .
diff --git a/pyproject.toml b/pyproject.toml
@@ -55,7 +55,7 @@ dependencies = [
     "ripple_detection",
     "seaborn",
     "sortingview>=0.11",
-    "spikeinterface>=0.98.2,<0.99",
+    "spikeinterface>=0.99.1,<0.100",
     "track_linearization>=2.3",
 ]
 dynamic = ["version"]
diff --git a/src/spyglass/spikesorting/v1/curation.py b/src/spyglass/spikesorting/v1/curation.py
@@ -213,7 +213,7 @@ def get_sorting(cls, key: dict) -> si.BaseSorting:
             }
         ]
 
-        sorting = si.NumpySorting.from_dict(
+        sorting = si.NumpySorting.from_unit_dict(
             units_dict_list, sampling_frequency=sampling_frequency
         )
 

Original file line number	Diff line number	Diff line change
`@@ -55,7 +55,7 @@ dependencies = [`
`55`	`55`	`"ripple_detection",`
`56`	`56`	`"seaborn",`
`57`	`57`	`"sortingview>=0.11",`
`58`		`- "spikeinterface>=0.98.2,<0.99",`
	`58`	`+ "spikeinterface>=0.99.1,<0.100",`
`59`	`59`	`"track_linearization>=2.3",`
`60`	`60`	`]`
`61`	`61`	`dynamic = ["version"]`
Original file line number	Diff line number	Diff line change
`@@ -213,7 +213,7 @@ def get_sorting(cls, key: dict) -> si.BaseSorting:`
`213`	`213`	`}`
`214`	`214`	`]`
`215`	`215`
`216`		`- sorting = si.NumpySorting.from_dict(`
	`216`	`+ sorting = si.NumpySorting.from_unit_dict(`
`217`	`217`	`units_dict_list, sampling_frequency=sampling_frequency`
`218`	`218`	`)`
`219`	`219`