bootswatch

Author: Carly Lovas

_pkgdown.yml

@@ -1,6 +1,9 @@
 url: https://carlylovas.github.io/species.shifts/
 template:
   bootstrap: 5
+  bslib:
+    bootswatch: cosmo
+    pkgdown-nav-height: 100px
 # navbar:
 #   structure:
 #     left: [intro, articles, reference, news]

vignettes/data_cleaning_functions.html

@@ -135,6 +135,7 @@ knitr::kable(read.csv(here::here("data","examples","nefsc.csv")))
 knitr::kable(read.csv(here::here("data","examples","permits.csv")))
 ```
 
+
 ### GARFO Dealer-reported landings
 
 `landings <- pull_landings(proj_path = my_path)`
@@ -145,12 +146,15 @@ knitr::kable(read.csv(here::here("data","examples","permits.csv")))
 #| warning: false
 #| echo: false
 
-my_path <- paste0(box_path, "Confidential/VTR and Dealer/Dealer Data 2025.xlsx")
-knitr::kable(species.shifts::pull_garfo_landings(proj_path = my_path, sheet = 1, skip = 9) |>
-               filter(is.na(confidential)) |>
-               head(n = 3))
+# my_path <- paste0(box_path, "Confidential/VTR and Dealer/Dealer Data 2025.xlsx")
+# knitr::kable(species.shifts::pull_garfo_landings(proj_path = my_path, sheet = 1, skip = 9) |>
+#                filter(is.na(confidential)) |>
+#                head(n = 3))
+knitr::kable(read.csv(here::here("data","examples","landings.csv")))
+
 ```
 
+
 ### Marine Recreational Information Program
 
 #### Directed trips
@@ -190,6 +194,7 @@ knitr::kable(read.csv(here::here("data","examples","catch.csv")))
 
 ```
 
+
 ## Plotting
 
 Once the data has been pulled and saved to the local environment, each data set has a respective `plot_()` or `map_()` function. More about those functions [here](https://carlylovas.github.io/species.shifts/articles/plotting_functions.html).

vignettes/data_cleaning_functions.qmd

@@ -154,6 +154,7 @@ knitr::include_graphics(here::here("images/summer flounder permit map.png"))
 ```
 
 ## NEFSC Bottom Trawl
+*In development*
 Given the wide breadth of fishery-indepented information provided by the federal bottom trawl survey, this data set has multiple plotting and mapping functions associated with it. 
 ``` r
 map_nefsc_cob()