Merge branch 'main' of https://github.com/MASILab/AtlasToDiffusionReg into main

Author: mkim-MASI

README.md

@@ -17,11 +17,6 @@ EDIT: this should be fixed now
 
 # TO DOs:
 
--QA of the registered atlases into diffusion space
-
-	-overlay of atlases on an FA map
-
-	-perhaps something else as well
 
 -Possibly options
 

Singularity

@@ -47,7 +47,8 @@ https://github.com/MASILab/AtlasToDiffusionReg
 
     # Install FSL
     apt-get -y install python wget ca-certificates libglu1-mesa libgl1-mesa-glx libsm6 libice6 libxt6 libpng16-16 libxrender1 libxcursor1 libxinerama1 libfreetype6 libxft2 libxrandr2 libgtk2.0-0 libpulse0 libasound2 libcaca0 libopenblas-base bzip2 dc bc 
-    wget -O /INSTALLERS/fslinstaller.py "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslinstaller.py"
+    #wget -O /INSTALLERS/fslinstaller.py "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslinstaller.py"
+    wget -O /INSTALLERS/fsinstaller.py "https://git.fmrib.ox.ac.uk/fsl/installer/-/raw/3.3.0/fslinstaller.py?inline=false"
     cd /INSTALLERS
     python fslinstaller.py -d /APPS/fsl -V 6.0.6
     cd /