Make mdadash a link in docs

Author: PardhavMaradani

docs/source/batching.rst

@@ -11,7 +11,7 @@ in `IMDReader`_.
 Buffered Access
 ---------------
 
-To support buffered, time-dependent analyses in ``mdadash``, a
+To support buffered, time-dependent analyses in `mdadash`_, a
 :class:`~mdadash.backend.kernel.core.BufferedTrajectory` is introduced.
 
 The original trajectory is wrapped by the :class:`~mdadash.backend.kernel.core.BufferedTrajectory`
@@ -96,6 +96,8 @@ The list of all the Widgets that support batching can be found on the
 :doc:`built_in_widgets` page.
 
 
+.. _mdadash: https://github.com/MDAnalysis/mdadash
+
 .. _IMDReader: https://docs.mdanalysis.org/stable/
     documentation_pages/coordinates/IMD.html
 

docs/source/getting_started.rst

@@ -1,12 +1,12 @@
 Getting Started
 ===============
 
-This page details how to get started with ``mdadash``.
+This page details how to get started with `mdadash`_.
 
 Installation
 ~~~~~~~~~~~~
 
-``mdadash`` can be installed in any of the following ways depending on
+`mdadash`_ can be installed in any of the following ways depending on
 your Python environment:
 
 .. code:: sh
@@ -41,7 +41,7 @@ To execute directly from an isolated environment without installing:
 Run
 ~~~
 
-Once the package is installed, it can be run using the ``mdadash``
+Once the package is installed, it can be run using the `mdadash`_
 command to start the dashboard server:
 
 .. code:: sh
@@ -107,3 +107,5 @@ The dashboard can be accessed by navigating to
 
 .. image:: _static/images/cover-image.png
    :alt: MDAnalysis Dashboard
+
+.. _mdadash: https://github.com/MDAnalysis/mdadash

docs/source/index.rst

@@ -3,10 +3,11 @@
    You can adapt this file completely to your liking, but it should at least
    contain the root `toctree` directive.
 
-Welcome to ``mdadash`` documentation!
+Welcome to `mdadash`_ documentation!
 =====================================
 
-Source code and contributing instructions for this project can be found in the `GitHub Repository <https://github.com/MDAnalysis/mdadash>`_.
+Source code and contributing instructions for this project can be found in the
+GitHub Repository: https://github.com/MDAnalysis/mdadash.
 
 .. toctree::
    :maxdepth: 2
@@ -26,3 +27,5 @@ Indices and tables
 
 * :ref:`genindex`
 * :ref:`modindex`
+
+.. _mdadash: https://github.com/MDAnalysis/mdadash

docs/source/parallelization.rst

@@ -1,19 +1,19 @@
 Parallelization
 ===============
 
-``mdadash`` supports running Widgets in parallel. It uses `Joblib`_ with the default
+`mdadash`_ supports running Widgets in parallel. It uses `Joblib`_ with the default
 ``loky`` backend to run the parallel jobs as separate processes. A global "Parallel Jobs"
 under "Settings > Dashboard Configuration" in the dasboard controls the total number of jobs
 that can run in parallel (``n_jobs`` param for `joblib.Parallel`_ call).
 
-All the analyses that run in ``mdadash`` are CPU-bound and hence a Process-based parallelism
+All the analyses that run in `mdadash`_ are CPU-bound and hence a Process-based parallelism
 is chosen instead of Thread-based parallelism.
 
 `IMDReader`_ uses `imdclient`_ to connect to a live MD simulation. Because of the use of a
-network socket within `imdclient`_, this is not serializable by default. ``mdadash`` patches
+network socket within `imdclient`_, this is not serializable by default. `mdadash`_ patches
 `IMDReader`_ to remove `imdclient`_ from the serialization state since the trajectory is never
 iterated using `imdclient`_ within a parallel job. This makes parallelization possible within
-``mdadash`` for streaming trajectories.
+`mdadash`_ for streaming trajectories.
 
 A Widget class that supports a ``parallel`` :ref:`_run_mode <run-mode>` must implement 
 :meth:`~mdadash.backend.widgets.base.WidgetBase.get_parallel_job` and
@@ -46,6 +46,8 @@ The list of all the Widgets that can be run in parallel can be found on the
 :doc:`built_in_widgets` page.
 
 
+.. _mdadash: https://github.com/MDAnalysis/mdadash
+
 .. _Joblib: https://joblib.readthedocs.io/en/stable/
 
 .. _joblib.Parallel: https://joblib.readthedocs.io/en/stable/generated/joblib.Parallel.html