-
Notifications
You must be signed in to change notification settings - Fork 14
Open
Description
I get the following error when trying to run niicat on a nifti file:
Traceback (most recent call last):
File "/raid/shared/tbartczak/conda/envs/tb/bin/niicat", line 50, in <module>
main()
File "/raid/shared/tbartczak/conda/envs/tb/bin/niicat", line 46, in main
plot(args.nifti_file, dpi=args.dpi)
File "/raid/shared/tbartczak/conda/envs/tb/lib/python3.11/site-packages/niicat/plotter.py", line 254, in plot
return _plot_nifti_preview(iFile, return_fig=return_fig, dpi=dpi)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/raid/shared/tbartczak/conda/envs/tb/lib/python3.11/site-packages/niicat/plotter.py", line 233, in _plot_nifti_preview
_plot_sixel(fig)
File "/raid/shared/tbartczak/conda/envs/tb/lib/python3.11/site-packages/niicat/plotter.py", line 36, in _plot_sixel
res = _sixel_encode(fig.canvas.buffer_rgba(), fig.get_figwidth()* dpi, fig.get_figheight() * dpi)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/raid/shared/tbartczak/conda/envs/tb/lib/python3.11/site-packages/niicat/plotter.py", line 23, in _sixel_encode
libsixel.sixel_dither_initialize(dither, data, w, h, libsixel.SIXEL_PIXELFORMAT_RGBA8888)
File "/raid/shared/tbartczak/conda/envs/tb/lib/python3.11/site-packages/libsixel/__init__.py", line 503, in sixel_dither_initialize
status = _sixel.sixel_dither_initialize(dither, data, width, height, pixelformat,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ctypes.ArgumentError: argument 2: TypeError: wrong type
I've installed niicat from source from the version in #8 as I got nibabel issues with pypi version.
From the stacktracie it seems that wrong datatype is passed to sixel when encoding figure?
My env:
Python 3.11
matplotlib==3.7.1
matplotlib-inline==0.1.6
numpy==1.24.3
nibabel==5.1.0
Reactions are currently unavailable
Metadata
Metadata
Assignees
Labels
No labels