Replace regSynth with LAMAReg as default cross-modality registration #79
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| name: CI - Micapipe Test | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| jobs: | |
| run-micapipe: | |
| runs-on: self-hosted | |
| timeout-minutes: 1440 | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Build Micapipe Docker image | |
| run: docker build -t micapipe:test . | |
| - name: Build Singularity (.sif) | |
| run: | | |
| export SINGULARITY_TMPDIR=/export02/local/singularity_tmp | |
| singularity build --force /export02/local/singularity_tmp/micapipe_v0.2.3.sif docker-daemon://micapipe:test | |
| - name: Point test script at new .sif | |
| run: | | |
| sed -i "s|^container_img=.*|container_img=/export02/local/singularity_tmp/micapipe_v0.2.3.sif|" tests/sample_test.sh | |
| - name: Run Micapipe Test | |
| run: | | |
| chmod +x ./tests/sample_test.sh | |
| ./tests/sample_test.sh |