DESCRIPTION

Package: epoch
Title: Dynamic GRN reconstruction from single cell RNA-Seq data
Version: 0.0.0.9000
Authors@R: c(person("Patrick", "Cahan", email = "patrick.cahan@gmail.com", role = c("aut", "cre")), person("Emily", "Su", email="esu3@jhmi.edu", role=c("aut")))
Description: Computationally reconstruct dynamic gene regulatory networks from single cell RNA-Seq data. Further integrate major signaling pathways with reconstructed GRNs and analyze network topologies.
Depends: R (>= 3.5.0), reshape2, ggplot2, igraph, loomR, gam, minet, pheatmap, RColorBrewer, GENIE3, DescTools, ggnetwork, gridExtra, pheatmap, viridis, viridisLite
License: MIT
Encoding: UTF-8
LazyData: true
biocViews:
Imports:
	reshape2,
	ggplot2,
	igraph,
	loomR,
	gam,
	minet,
	pheatmap,
	RColorBrewer,
	GENIE3,
	DescTools,
	ggnetwork,
	gridExtra,
	pheatmap	
RoxygenNote: 7.1.1