Update data_2d.py #1030
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| name: TestingInConda | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| pull_request: | |
| branches: | |
| - '*' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test-matrix: | |
| name: Test (${{ matrix.python-version }}, ${{ matrix.pandas-track }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.11", "3.12", "3.13"] | |
| pandas-track: ["pandas2", "pandas3"] | |
| include: | |
| - python-version: "3.11" | |
| pandas-track: "pandas2" | |
| pandas-constraint: "<3" | |
| - python-version: "3.11" | |
| pandas-track: "pandas3" | |
| pandas-constraint: ">=3" | |
| - python-version: "3.12" | |
| pandas-track: "pandas2" | |
| pandas-constraint: "<3" | |
| - python-version: "3.12" | |
| pandas-track: "pandas3" | |
| pandas-constraint: ">=3" | |
| - python-version: "3.13" | |
| pandas-track: "pandas2" | |
| pandas-constraint: "<3" | |
| - python-version: "3.13" | |
| pandas-track: "pandas3" | |
| pandas-constraint: ">=3" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Miniconda with Mamba | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| channels: conda-forge | |
| channel-priority: strict | |
| python-version: ${{ matrix.python-version }} | |
| miniforge-version: latest | |
| use-mamba: true | |
| - name: Cache Conda Packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: conda-pkgs-${{ runner.os }}-py${{ matrix.python-version }}-pd${{ matrix.pandas-track }}-${{ hashFiles('environment.yml') }} | |
| restore-keys: | | |
| conda-pkgs-${{ runner.os }}-py${{ matrix.python-version }}-pd${{ matrix.pandas-track }}- | |
| - name: Install uv | |
| run: | | |
| curl -LsSf https://astral.sh/uv/install.sh | sh | |
| echo "$HOME/.cargo/bin" >> $GITHUB_PATH | |
| - name: Install Env | |
| shell: bash | |
| env: | |
| CONDA_OVERRIDE_PYTHON: ${{ matrix.python-version }} | |
| PANDAS_CONSTRAINT: pandas${{ matrix.pandas-constraint }} | |
| run: | | |
| python --version | |
| mamba env create -f environment.yml --name mtpy-v2-test python=${{ matrix.python-version }} "$PANDAS_CONSTRAINT" | |
| source ~/.profile | |
| conda init --all | |
| conda activate mtpy-v2-test | |
| python --version | |
| uv pip install git+https://github.com/simpeg/pydiso.git | |
| uv pip install git+https://github.com/kujaku11/mt_metadata@main | |
| uv pip install git+https://github.com/kujaku11/mth5.git@master | |
| uv pip install git+https://github.com/simpeg/aurora@main | |
| uv pip install git+https://github.com/MTgeophysics/mtpy_data.git | |
| - name: Install Our Package | |
| shell: bash | |
| run: | | |
| source ~/.profile | |
| conda init --all | |
| conda activate mtpy-v2-test | |
| uv pip install -e .[test] | |
| python -c "import pandas as pd; print(f'pandas version: {pd.__version__}')" | |
| conda list | |
| - name: Run Simpeg1D tests (non-Windows) | |
| if: runner.os != 'Windows' | |
| shell: bash | |
| run: | | |
| source ~/.profile | |
| conda init --all | |
| conda activate mtpy-v2-test | |
| pytest -rA -q tests/modeling/simpeg/test_simpeg_1d_inversion_recipe.py | |
| - name: Run Tests | |
| shell: bash | |
| run: | | |
| source ~/.profile | |
| conda init --all | |
| conda activate mtpy-v2-test | |
| pytest -rA -n 2 --ignore=tests/perf | |
| coverage: | |
| name: Coverage (3.12, pandas2, ubuntu-latest) | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'push' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Miniconda with Mamba | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| channels: conda-forge | |
| channel-priority: strict | |
| python-version: "3.12" | |
| miniforge-version: latest | |
| use-mamba: true | |
| - name: Cache Conda Packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: conda-pkgs-${{ runner.os }}-py3.12-pdpandas2-${{ hashFiles('environment.yml') }} | |
| restore-keys: | | |
| conda-pkgs-${{ runner.os }}-py3.12-pdpandas2- | |
| - name: Install uv | |
| run: | | |
| curl -LsSf https://astral.sh/uv/install.sh | sh | |
| echo "$HOME/.cargo/bin" >> $GITHUB_PATH | |
| - name: Install Env | |
| shell: bash | |
| env: | |
| CONDA_OVERRIDE_PYTHON: "3.12" | |
| PANDAS_CONSTRAINT: "pandas<3" | |
| run: | | |
| python --version | |
| mamba env create -f environment.yml --name mtpy-v2-test python=3.12 "$PANDAS_CONSTRAINT" | |
| source ~/.profile | |
| conda init --all | |
| conda activate mtpy-v2-test | |
| python --version | |
| uv pip install git+https://github.com/simpeg/pydiso.git | |
| uv pip install git+https://github.com/kujaku11/mt_metadata@main | |
| uv pip install git+https://github.com/kujaku11/mth5.git@master | |
| uv pip install git+https://github.com/simpeg/aurora@main | |
| uv pip install git+https://github.com/MTgeophysics/mtpy_data.git | |
| - name: Install Our Package | |
| shell: bash | |
| run: | | |
| source ~/.profile | |
| conda init --all | |
| conda activate mtpy-v2-test | |
| uv pip install -e .[test] | |
| python -c "import pandas as pd; print(f'pandas version: {pd.__version__}')" | |
| conda list | |
| - name: Run Tests with Coverage | |
| shell: bash | |
| run: | | |
| source ~/.profile | |
| conda init --all | |
| conda activate mtpy-v2-test | |
| pytest -rA --cov=mtpy --cov-report=xml -n 2 --ignore=tests/perf | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| with: | |
| fail_ci_if_error: false | |
| verbose: true | |
| flags: tests |