CLI Tool Commands & Core Refactoring #412

Job	Run time
Setup workflow	4s
pre-commit	3m 42s
Pixi lock	11s
pytest (py312, macos-latest)	3m 34s
pytest (py311, windows-latest)	1m 56s
pytest (py311, macos-latest)	1m 57s
pytest (py311, ubuntu-latest)	1m 47s
pytest (py312, ubuntu-latest)	3m 27s
pytest (py312, windows-latest)	3m 29s
ui:${{ matrix.environment }}:${{ matrix.os }}	-1s
	20m 6s

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