pyPaperFlow/pyproject.toml at main · MaybeBio/pyPaperFlow · GitHub

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[build-system]
requires = ["hatchling >= 1.26"]
build-backend = "hatchling.build"

[project]
name = "pyPaperFlow"
dynamic = ["version"] # v0.2.0
authors = [
    { name = "Joe Hoye Dow", email = "luxunisgod123@gmail.com" }
]
description = "Automated paper fetching and analysis platform."
readme = "README.md"
requires-python = ">=3.13.5"
license = "GPL-3.0"
license-files = ["LICENSE"]
keywords = ["pypaperflow", "literature-processing", "paper-fetch", "pypaperflow", "pypaperflow",
"pdf-parse", "text-mining", "nlp", "knowledge-extraction", "automated-literature", "pubmed", "arxiv",
"bioRxiv", "mineru", "mineru", "llm", "research-workflow", "bioinformatics", "scientific-corpus",
"citation-extraction", "structured-parsing"]

classifiers = [
  "Programming Language :: Python :: 3",
  "Programming Language :: Python :: 3.13",
  "Programming Language :: Python :: 3.14",
  "Operating System :: OS Independent",
  "License :: OSI Approved :: GNU General Public License v3 (GPLv3)"
]

dependencies = [
  "biopython>=1.87",
  "typer>=0.25.0",
  "pandas>=2.3.3",
  "requests>=2.33.1",
  "httpx>=0.28.1",
  "bs4>=0.0.2",
  "lxml>=6.1.0",
  "pydantic>=2.13.3",
  "PyYAML>=6.0.3"
]

[project.urls]
Homepage = "https://github.com/MaybeBio/pyPaperFlow"
Issues = "https://github.com/MaybeBio/pyPaperFlow/issues"


[project.optional-dependencies]
paperscraper = [
  "paperscraper"
]

[project.scripts]
paperflow = "pyPaperFlow.cli:app"

[tool.hatch.build.targets.wheel]
packages = ["src/pyPaperFlow"]

[tool.hatch.build.targets.sdist]
exclude = [
  "/test",
  "/Papers",
  "/figs",
  "/docs",
  "/skills",
  "/config",
]

[tool.hatch.version]
# modify version information here
path = "src/pyPaperFlow/__init__.py"