path-fm-dinov3/pyproject.toml at main · MedARC-AI/path-fm-dinov3 · GitHub

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[project]
name = "path-fm"
version = "0.1.0"
description = "Pathology foundation model training on DINOv3"
readme = "README.md"
requires-python = ">=3.12.00"
dependencies = [
  "datasets>=2.20.0",
  "einops>=0.8.1",
  "fvcore>=0.1.5.post20221221",
  "ftfy",
  "iopath>=0.1.10",
  "omegaconf>=2.3.0",
  "opencv-python>=4.12.0.88",
  "openslide-bin>=4.0.0.8",
  "openslide-python>=1.4.2",
  "pyarrow>=15.0.0",
  "regex",
  "scikit-image>=0.25.2",
  "scikit-learn",
  "submitit>=1.5.3",
  "termcolor",
  "torch",
  "torchmetrics>=1.8.0",
  "torchvision",
  "wandb>=0.17.0",
  # for Eva benchmarking:
  "imagesize>=1.4.1",
  "scipy>=1.14.0",
  "monai>=1.3.2",
  "lightning>=2.2.0",
  "jsonargparse[omegaconf]>=4.30.0",
  "tensorboard>=2.16.2",
  "loguru>=0.7.2",
  "transformers>=4.38.2",
  "onnxruntime>=1.15.1",
  "onnx>=1.16.0",
  "toolz>=0.12.1",
  "rich>=13.7.1",
  "nibabel>=3.2.2",
  "timm>=1.0.9",
  # for HEST benchmarking:
  "hestcore==1.0.4",
]

[tool.setuptools.packages.find]
include = ["dinov3*"]

[build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"