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Merge pull request #565 from petrelharp/tskit_v1b2 #1796

Merge pull request #565 from petrelharp/tskit_v1b2

Merge pull request #565 from petrelharp/tskit_v1b2 #1796

Triggered via push December 2, 2025 00:43
Status Success
Total duration 23m 14s
Artifacts

tests.yml

on: push
canceller
5s
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Matrix: tests-Unix-CLI
Matrix: tests-Unix-GUI
Matrix: tests-Windows-CLI
Matrix: tests-Windows-GUI
Matrix: tests-windows-latest-pacman
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52 warnings and 2 notices
tests-Unix-CLI (macos-15, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-arm64/libzlib-1.3.1-h8359307_2.conda
tests-Unix-CLI (macos-15, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-arm64/liblzma-5.8.1-h39f12f2_2.conda
tests-Unix-CLI (macos-15, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-arm64/libiconv-1.18-h23cfdf5_2.conda
tests-Unix-CLI (macos-15, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-arm64/libffi-3.5.2-he5f378a_0.conda
tests-Unix-CLI (macos-15, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-arm64/libexpat-2.7.3-haf25636_0.conda
tests-Unix-CLI (macos-15, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-arm64/libev-4.33-h93a5062_2.conda
tests-Unix-CLI (macos-15, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-arm64/libcxx-21.1.6-hf598326_0.conda
tests-Unix-CLI (macos-15, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.11.12-hbd8a1cb_0.conda
tests-Unix-CLI (macos-15, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-arm64/c-ares-1.34.5-h5505292_0.conda
tests-Unix-CLI (macos-15, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-arm64/bzip2-1.0.8-hd037594_8.conda
tests-Unix-CLI (ubuntu-22.04, 9, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_8.conda
tests-Unix-CLI (ubuntu-22.04, 9, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.2.0-he0feb66_14.conda
tests-Unix-CLI (ubuntu-22.04, 9, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2
tests-Unix-CLI (ubuntu-22.04, 9, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/noarch/tzdata-2025b-h78e105d_0.conda
tests-Unix-CLI (ubuntu-22.04, 9, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/noarch/python_abi-3.12-8_cp312.conda
tests-Unix-CLI (ubuntu-22.04, 9, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/noarch/pybind11-abi-11-hc364b38_1.conda
tests-Unix-CLI (ubuntu-22.04, 9, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/noarch/nlohmann_json-abi-3.12.0-h0f90c79_1.conda
tests-Unix-CLI (ubuntu-22.04, 9, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.2.0-he0feb66_14.conda
tests-Unix-CLI (ubuntu-22.04, 9, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.11.12-hbd8a1cb_0.conda
tests-Unix-CLI (ubuntu-22.04, 9, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2
tests-Unix-CLI (ubuntu-24.04, 12, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_8.conda
tests-Unix-CLI (ubuntu-24.04, 12, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.2.0-he0feb66_14.conda
tests-Unix-CLI (ubuntu-24.04, 12, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2
tests-Unix-CLI (ubuntu-24.04, 12, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/noarch/tzdata-2025b-h78e105d_0.conda
tests-Unix-CLI (ubuntu-24.04, 12, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/noarch/python_abi-3.12-8_cp312.conda
tests-Unix-CLI (ubuntu-24.04, 12, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/noarch/pybind11-abi-11-hc364b38_1.conda
tests-Unix-CLI (ubuntu-24.04, 12, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/noarch/nlohmann_json-abi-3.12.0-h0f90c79_1.conda
tests-Unix-CLI (ubuntu-24.04, 12, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.2.0-he0feb66_14.conda
tests-Unix-CLI (ubuntu-24.04, 12, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.11.12-hbd8a1cb_0.conda
tests-Unix-CLI (ubuntu-24.04, 12, 3.12)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2
tests-Unix-CLI (macos-13, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-64/liblzma-5.8.1-hd471939_2.conda
tests-Unix-CLI (macos-13, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-64/libiconv-1.18-h57a12c2_2.conda
tests-Unix-CLI (macos-13, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-64/libffi-3.5.2-h750e83c_0.conda
tests-Unix-CLI (macos-13, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-64/libexpat-2.7.3-heffb93a_0.conda
tests-Unix-CLI (macos-13, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-64/libev-4.33-h10d778d_2.conda
tests-Unix-CLI (macos-13, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-64/libcxx-21.1.6-h3d58e20_0.conda
tests-Unix-CLI (macos-13, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-64/icu-75.1-h120a0e1_0.conda
tests-Unix-CLI (macos-13, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.11.12-hbd8a1cb_0.conda
tests-Unix-CLI (macos-13, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-64/c-ares-1.34.5-hf13058a_0.conda
tests-Windows-CLI (mingw64, x86_64, 3.9)
WARNING conda.cli.main_config:_set_key(456): Key auto_activate_base is an alias of auto_activate; setting value with latter
tests-Unix-CLI (macos-13, 3.9)
warning libmamba Did not find a repodata record for https://conda.anaconda.org/conda-forge/osx-64/bzip2-1.0.8-h500dc9f_8.conda
tests-Windows-CLI (mingw64, x86_64, 3.9)
CondaKeyError: 'channels': value 'defaults' not present in config
tests-Windows-CLI (mingw64, x86_64, 3.9)
'nodefaults' channel detected: will remove 'defaults' if added implicitly. In the future, 'nodefaults' to remove 'defaults' won't be supported. Please set 'conda-remove-defaults' = 'true' in setup-miniconda to remove this warning.
tests-Windows-CLI (mingw64, x86_64, 3.9)
EnvironmentNameNotFound: Could not find conda environment: anaconda-client-env You can list all discoverable environments with `conda info --envs`.
tests-Windows-CLI (mingw64, x86_64, 3.9)
WARNING conda.cli.main_config:_set_key(456): Key auto_activate_base is an alias of auto_activate; setting value with latter
tests-Windows-CLI (mingw64, x86_64, 3.9)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
tests-Windows-CLI (ucrt64, ucrt-x86_64, 3.9)
WARNING conda.cli.main_config:_set_key(456): Key auto_activate_base is an alias of auto_activate; setting value with latter
tests-Windows-CLI (ucrt64, ucrt-x86_64, 3.9)
CondaKeyError: 'channels': value 'defaults' not present in config
tests-Windows-CLI (ucrt64, ucrt-x86_64, 3.9)
'nodefaults' channel detected: will remove 'defaults' if added implicitly. In the future, 'nodefaults' to remove 'defaults' won't be supported. Please set 'conda-remove-defaults' = 'true' in setup-miniconda to remove this warning.
tests-Windows-CLI (ucrt64, ucrt-x86_64, 3.9)
EnvironmentNameNotFound: Could not find conda environment: anaconda-client-env You can list all discoverable environments with `conda info --envs`.
tests-Windows-CLI (ucrt64, ucrt-x86_64, 3.9)
WARNING conda.cli.main_config:_set_key(456): Key auto_activate_base is an alias of auto_activate; setting value with latter
tests-Windows-CLI (ucrt64, ucrt-x86_64, 3.9)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
tests-Unix-GUI (macos-13, 5.15.2)
The macOS-13 based runner images are being deprecated, consider switching to macOS-15 (macos-15-intel) or macOS 15 arm64 (macos-latest) instead. For more details see https://github.com/actions/runner-images/issues/13046
tests-Unix-CLI (macos-13, 3.9)
The macOS-13 based runner images are being deprecated, consider switching to macOS-15 (macos-15-intel) or macOS 15 arm64 (macos-latest) instead. For more details see https://github.com/actions/runner-images/issues/13046