New data collected at 2025-05-19_00-02-37

actions-user · actions-user · commit 1270aa38f954 · 2025-05-19T00:02:37.000Z
diff --git a/github-actions/data.table/R-CMD-check-occasional.yaml b/github-actions/data.table/R-CMD-check-occasional.yaml
@@ -15,7 +15,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [macOS-latest, windows-latest, ubuntu-latest]
-        r: ['devel', 'release', '3.3', '3.4', '3.5', '3.6', '4.0', '4.1', '4.2', '4.3']
+        r: ['devel', 'release', '3.4', '3.5', '3.6', '4.0', '4.1', '4.2', '4.3']
         locale: ['en_US.utf8', 'zh_CN.utf8', 'lv_LV.utf8'] # Chinese for translations, Latvian for collate order (#3502)
         exclude:
           # only run non-English locale CI on Ubuntu
@@ -28,8 +28,6 @@ jobs:
           - os: windows-latest
             locale: 'lv_LV.utf8'
           # macOS/arm64 only available for R>=4.1.0
-          - os: macOS-latest
-            r: '3.3'
           - os: macOS-latest
             r: '3.4'
           - os: macOS-latest
diff --git a/github-actions/mlflow/js.yml b/github-actions/mlflow/js.yml
@@ -70,9 +70,10 @@ jobs:
       - name: Run prettier
         run: |
           yarn prettier:check
-      - name: Run knip
-        run: |
-          yarn knip
+      # TODO: Disabled for now. Revisit after DAIS.
+      # - name: Run knip
+      #   run: |
+      #     yarn knip
       - name: Run extract-i18n lint
         run: |
           yarn i18n:check
diff --git a/github-actions/mlflow/master.yml b/github-actions/mlflow/master.yml
@@ -90,14 +90,15 @@ jobs:
       - name: Import check
         run: |
           source .venv/bin/activate
-          python tests/check_mlflow_lazily_imports_ml_packages.py
+          # `-I` is used to avoid importing modules from user-specific site-packages
+          # that might conflict with the built-in modules (e.g. `types`).
+          python -I tests/check_mlflow_lazily_imports_ml_packages.py
       - name: Run tests
         run: |
           source .venv/bin/activate
           source dev/setup-ssh.sh
           pytest --splits=${{ matrix.splits }} --group=${{ matrix.group }} --quiet --requires-ssh \
-            --ignore-flavors --ignore=tests/examples --ignore=tests/recipes --ignore=tests/evaluate \
-            --ignore=tests/deployments/server --ignore=tests/pyspark/optuna \
+            --ignore-flavors --ignore=tests/examples --ignore=tests/evaluate \
             --ignore tests/genai tests
 
   py310:
@@ -332,10 +333,16 @@ jobs:
       - name: Install dependencies
         run: |
           source ./dev/install-common-deps.sh
+          # GenAI evaluation tests require databricks-agents that only work with Python >= 3.10
+          pip install 'databricks-agents<0.22.0' openai
+      - uses: ./.github/actions/show-versions
       - name: Run GenAI Tests
         run: |
           # GenAI evaluation tests require databricks-agents that only work with Python 3.10~
-          pip install databricks-agents openai
+          pip install openai
+          # Install databricks-agents from a pre-release wheel because the latest released version
+          # is not compatible with MLflow master. Using --no-deps because it pings mlflow to 3.0.0rc2.
+          pip install https://ml-team-public-read.s3.us-west-2.amazonaws.com/wheels/rag-studio/dev/samraj.moorjani/databricks_agents-1.0.0rc1.dev0-py3-none-any.whl --no-deps
           pytest tests/genai
 
   optuna:
@@ -481,5 +488,5 @@ jobs:
           export PATH=$PATH:$HADOOP_HOME/bin
           # Run Windows tests
           pytest --splits=${{ matrix.splits }} --group=${{ matrix.group }} \
-            --ignore-flavors --ignore=tests/projects --ignore=tests/examples --ignore=tests/recipes --ignore=tests/evaluate --ignore tests/deployments/server --ignore=tests/optuna \
+            --ignore-flavors --ignore=tests/projects --ignore=tests/examples --ignore=tests/evaluate --ignore=tests/optuna \
             --ignore=tests/genai tests
diff --git a/github-actions/mlflow/protobuf-cross-test.yml b/github-actions/mlflow/protobuf-cross-test.yml
@@ -79,6 +79,6 @@ jobs:
       - name: Run tests
         run: |
           pytest --splits=${{ matrix.splits }} --group=${{ matrix.group }} \
-            --ignore-flavors --ignore=tests/projects --ignore=tests/examples --ignore=tests/evaluate --ignore tests/deployments/server \
-            --ignore=tests/optuna --ignore=tests/genai\
+            --ignore-flavors --ignore=tests/projects --ignore=tests/examples --ignore=tests/evaluate \
+            --ignore=tests/optuna --ignore=tests/genai \
             tests
diff --git a/github-actions/mlflow/requirements.yml b/github-actions/mlflow/requirements.yml
@@ -89,4 +89,4 @@ jobs:
           source dev/setup-ssh.sh
           pytest tests --quiet --requires-ssh --ignore-flavors \
             --ignore=tests/examples --ignore=tests/evaluate \
-            --ignore=tests/deployments
+            --ignore=tests/deployments --ignore=tests/genai
diff --git a/github-actions/mlflow/tracing.yaml b/github-actions/mlflow/tracing.yaml
@@ -52,6 +52,7 @@ jobs:
         # NB: OTLP exporter includes large dependencies, so we want to test it in a separate job
         #     to avoid overlooking unnecessary dependencies in the core tracing package.
         run: |
+          export PYTHONPATH=$(pwd)
           pytest tests/tracing --ignore tests/tracing/utils/test_otlp.py --import-mode=importlib
 
   # TODO: Add a job to run autologging tests against integrated libraries (latest versions)
diff --git a/github-actions/pak/R-CMD-check.yaml b/github-actions/pak/R-CMD-check.yaml
@@ -8,7 +8,6 @@ on:
   push:
     branches: [main, master]
   pull_request:
-    branches: [main, master]
 
 name: R-CMD-check.yaml
 
diff --git a/github-actions/pak/nightly.yaml b/github-actions/pak/nightly.yaml
@@ -372,7 +372,7 @@ jobs:
       with:
         release: ${{ matrix.config.release }}
 
-    - uses: r-hub/actions/setup-r-openbsd@v1
+    - uses: r-hub/actions/setup-r-openbsd@main
       if: ${{ matrix.config.os == 'openbsd' }}
       with:
         release: ${{ matrix.config.release }}
diff --git a/github-actions/pak/pkgdown.yaml b/github-actions/pak/pkgdown.yaml
@@ -4,7 +4,6 @@ on:
   push:
     branches: [main, master]
   pull_request:
-    branches: [main, master]
   release:
     types: [published]
   workflow_dispatch:
diff --git a/github-actions/pak/test-coverage.yaml b/github-actions/pak/test-coverage.yaml
@@ -4,7 +4,6 @@ on:
   push:
     branches: [main, master]
   pull_request:
-    branches: [main, master]
 
 name: test-coverage.yaml
 
@@ -35,14 +34,16 @@ jobs:
             clean = FALSE,
             install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
           )
+          print(cov)
           covr::to_cobertura(cov)
         shell: Rscript {0}
 
-      - uses: codecov/codecov-action@v4
+      - uses: codecov/codecov-action@v5
         with:
-          fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
-          file: ./cobertura.xml
-          plugin: noop
+          # Fail if error if not on PR, or if on PR and token is given
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
+          files: ./cobertura.xml
+          plugins: noop
           disable_search: true
           token: ${{ secrets.CODECOV_TOKEN }}
 
diff --git a/github-actions/prophet/build-and-test.yml b/github-actions/prophet/build-and-test.yml
@@ -47,54 +47,47 @@ jobs:
   build-and-test-r:
 
     runs-on: ${{ matrix.config.os }}
+    name: R ${{ matrix.config.os }} (${{ matrix.config.r }})
     strategy:
       matrix:
         config:
-          - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: ubuntu-22.04, r: 'release'}
       fail-fast: false
 
     env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
       R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
-      RSPM: ${{ matrix.config.rspm }}
+      PKGDIR: "R/"
 
     steps:
-    - uses: actions/checkout@v4
-    - uses: r-lib/actions/setup-pandoc@v2
-    - name: Set up R
-      uses: r-lib/actions/setup-r@v2
-      with:
-        r-version: ${{ matrix.config.r }}
-    - name: Install remotes
-      run: |
-        install.packages('remotes')
-      shell: Rscript {0}
-    - name: Query dependencies
-      run: |
-        saveRDS(remotes::dev_package_deps(pkgdir = "R/", dependencies = TRUE), ".github/depends.Rds", version = 2)
-        writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
-      shell: Rscript {0}
-    - name: Restore R package cache
-      if: runner.os != 'Windows'
-      uses: actions/cache@v4
-      with:
-        path: ${{ env.R_LIBS_USER }}
-        key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
-        restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
-    - name: Install system dependencies
-      if: runner.os == 'Linux'
-      run: |
-        while read -r cmd
-        do
-          eval sudo $cmd
-        done < <(Rscript -e 'writeLines(remotes::system_requirements(os = "ubuntu", os_release = "20.04", path = "R/"))')
-    - name: Install dependencies
-      run: |
-        remotes::install_deps(pkgdir = "R/", dependencies = NA)
-        remotes::install_cran(c("rcmdcheck", "knitr", "testthat", "readr", "rmarkdown"))
-        install.packages(c("cmdstanr", "posterior"), repos = c("https://mc-stan.org/r-packages/", getOption("repos")))
-      shell: Rscript {0}
-    - name: Check
-      uses: r-lib/actions/check-r-package@v2
-      with:
-        working-directory: "R/"
-        upload-snapshots: true
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          use-public-rspm: true
+
+      # Install dependencies - separating the steps to fix dependency conflicts
+      - name: Install dependencies
+        run: |
+          install.packages('remotes')
+          remotes::install_deps(dependencies = TRUE)
+          remotes::install_cran(c("rcmdcheck", "knitr", "testthat", "readr", "rmarkdown"))
+        shell: Rscript {0}
+        working-directory: ${{ env.PKGDIR }}
+
+      # Install Stan packages separately if needed
+      - name: Install Stan packages
+        run: |
+          install.packages(c("cmdstanr", "posterior"), repos = c("https://mc-stan.org/r-packages/", getOption("repos")))
+        shell: Rscript {0}
+
+      - name: Check
+        uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
+          working-directory: ${{ env.PKGDIR }}
diff --git a/github-actions/styler/pre-commit.yaml b/github-actions/styler/pre-commit.yaml
@@ -27,7 +27,7 @@ jobs:
           fetch-depth: 0
 
       - name: Set up Python
-        uses: actions/setup-python@v5.5.0
+        uses: actions/setup-python@v5.6.0
         with:
           python-version: "3.13"
 
diff --git a/github-actions/xgboost/main.yml b/github-actions/xgboost/main.yml
@@ -269,7 +269,7 @@ jobs:
             runner: linux-amd64-cpu
             artifact_from: build-cuda
           - description: cpu-arm64
-            image_repo: xgb-ci.aarch64
+            image_repo: xgb-ci.manylinux_2_28_aarch64
             suite: cpu-arm64
             runner: linux-arm64-cpu
             artifact_from: build-python-wheels-arm64
diff --git a/gitignore/xgboost.gitignore b/gitignore/xgboost.gitignore
@@ -163,3 +163,4 @@ Rplots.pdf
 
 # nsys
 *.nsys-rep
+rmm_log.dev*
diff --git a/gitignore/zeallot.gitignore b/gitignore/zeallot.gitignore
@@ -2,4 +2,5 @@
 .Rhistory
 .RData
 .Ruserdata
+.DS_Store
 inst/doc
diff --git a/gitlab-ci/data.table.gitlab-ci.yml b/gitlab-ci/data.table.gitlab-ci.yml
@@ -203,13 +203,13 @@ test-lin-dev-clang-cran:
 # stated dependency on R
 test-lin-ancient-cran:
   <<: *test-lin
-  image: registry.gitlab.com/rdatatable/dockerfiles/r-3.3.0
+  image: registry.gitlab.com/rdatatable/dockerfiles/r-3.4.0
   variables:
     _R_CHECK_FORCE_SUGGESTS_: "FALSE" # can be removed if all dependencies are available (knitr, xts, etc.)
   script:
     - *install-deps
     # knitr requires evaluate, which requires R 3.6.0.
-    # Restore checking vignettes if upgrading our R dependency means knitr can be installed.
+    # Restore checking vignettes if upgrading our R dependency means knitr can be installed, or when we switch to litedown.
     - R CMD check --no-manual --no-build-vignettes --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
 
 # run the main checks with Address(+Leak),UBSanitizer enabled
diff --git a/pkgdown/pak_pkgdown.yml b/pkgdown/pak_pkgdown.yml
@@ -95,6 +95,7 @@ reference:
   - repo_auth
   - repo_auth_key_get
   - repo_auth_key_set
+  - repo_auth_unlock
   - repo_get
   - repo_status
 
diff --git a/rbuildignore/pak.Rbuildignore b/rbuildignore/pak.Rbuildignore
@@ -54,3 +54,5 @@
 ^src/library/zip/src/tools/cmdunzip$
 ^src/library/zip/src/tools/cmdzip$
 ^src/library/keyring/src/Makevars$
+^[\.]?air\.toml$
+^\.vscode$
diff --git a/rbuildignore/zeallot.Rbuildignore b/rbuildignore/zeallot.Rbuildignore
@@ -7,3 +7,4 @@
 ^\.appveyor\.yml$
 ^cran-comments\.md$
 ^revdep$
+^README\.Rmd$
diff --git a/rproj/ggplot2.Rproj b/rproj/ggplot2.Rproj
@@ -1,5 +1,4 @@
 Version: 1.0
-ProjectId: f500cb87-e0be-413f-b396-3eb022932f55
 
 RestoreWorkspace: Default
 SaveWorkspace: Default
