New data collected at 2025-12-29_00-03-06

actions-user · actions-user · commit f8efdfe5e4d7 · 2025-12-29T00:03:06.000Z
diff --git a/github-actions/data.table/R-CMD-check-occasional.yaml b/github-actions/data.table/R-CMD-check-occasional.yaml
@@ -16,7 +16,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [macOS-latest, windows-latest, ubuntu-latest]
-        r: ['devel', 'release', '3.4', '3.5', '3.6', '4.0', '4.1', '4.2', '4.3']
+        r: ['devel', 'release', '3.5', '3.6', '4.0', '4.1', '4.2', '4.3']
         locale: ['en_US.utf8', 'zh_CN.utf8', 'lv_LV.utf8'] # Chinese for translations, Latvian for collate order (#3502)
         exclude:
           # only run non-English locale CI on Ubuntu
@@ -29,8 +29,6 @@ jobs:
           - os: windows-latest
             locale: 'lv_LV.utf8'
           # macOS/arm64 only available for R>=4.1.0
-          - os: macOS-latest
-            r: '3.4'
           - os: macOS-latest
             r: '3.5'
           - os: macOS-latest
@@ -65,7 +63,7 @@ jobs:
           echo "LC_ALL=lv_LV.utf8" >> $GITHUB_ENV
           echo "LANGUAGE=lv_LV" >> $GITHUB_ENV
 
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
 
       - uses: r-lib/actions/setup-r@v2
         with:
@@ -113,7 +111,7 @@ jobs:
             TEST_DATA_TABLE_WITH_OTHER_PACKAGES=as.character(run_other)
           )
 
-          do_vignettes = requireNamespace("knitr", quietly=TRUE)
+          do_vignettes = requireNamespace("litedown", quietly=TRUE)
 
           build_args = NULL
           check_args = c("--no-manual", "--as-cran")
diff --git a/github-actions/data.table/R-CMD-check.yaml b/github-actions/data.table/R-CMD-check.yaml
@@ -40,7 +40,7 @@ jobs:
       _R_CHECK_RD_CHECKRD_MINLEVEL_: -Inf
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
 
       - uses: r-lib/actions/setup-r@v2
         with:
@@ -55,7 +55,7 @@ jobs:
         shell: Rscript {0}
 
       - name: Restore R package cache
-        uses: actions/cache@v4
+        uses: actions/cache@v5
         with:
           path: ${{ env.R_LIBS_USER }}
           key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
diff --git a/github-actions/data.table/code-quality.yaml b/github-actions/data.table/code-quality.yaml
@@ -16,7 +16,7 @@ jobs:
       md: ${{ steps.filter.outputs.md }}
       rd: ${{ steps.filter.outputs.rd }}
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0  # ensure diff against base is available for PRs
       - uses: dorny/paths-filter@v3
@@ -44,7 +44,7 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
 
       - uses: r-lib/actions/setup-r@v2
         with:
@@ -68,7 +68,7 @@ jobs:
     if: needs.changes.outputs.c == 'true' || github.event_name == 'workflow_dispatch'
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
       - uses: r-lib/actions/setup-r@v2
       - name: Install Coccinelle
         # relying on the action above us to have updated the package cache
@@ -81,7 +81,7 @@ jobs:
     if: needs.changes.outputs.po == 'true' || github.event_name == 'workflow_dispatch'
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
       - uses: r-lib/actions/setup-r@v2
       - name: Check translations
         # only pay attention to files edited in the current PR, otherwise we can get
@@ -96,7 +96,7 @@ jobs:
     if: needs.changes.outputs.md == 'true' || github.event_name == 'workflow_dispatch'
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
       - uses: r-lib/actions/setup-r@v2
       - name: Lint
         run: Rscript .ci/lint.R .ci/linters/md . '[.]R?md$'
@@ -105,7 +105,7 @@ jobs:
     if: needs.changes.outputs.rd == 'true' || github.event_name == 'workflow_dispatch'
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
       - uses: r-lib/actions/setup-r@v2
       - name: Lint Rd files
         run: Rscript .ci/lint.R .ci/linters/rd man '[.]Rd$'
diff --git a/github-actions/data.table/cran-status-check.yaml b/github-actions/data.table/cran-status-check.yaml
@@ -13,7 +13,7 @@ jobs:
     permissions:
       issues: write
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
 
       - uses: r-lib/actions/setup-r@v2
         with:
diff --git a/github-actions/data.table/pkgup.yaml b/github-actions/data.table/pkgup.yaml
@@ -22,11 +22,11 @@ jobs:
       url: ${{ steps.deployment.outputs.page_url }}
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
       - uses: r-lib/actions/setup-pandoc@v2
       - uses: r-lib/actions/setup-r@v2
       - name: cache-r-dependencies
-        uses: actions/cache@v4
+        uses: actions/cache@v5
         with:
           path: ${{ env.R_LIBS_USER }}/*
           key: library-cache-${{ github.run_id }}
@@ -58,7 +58,7 @@ jobs:
           Rscript -e 'tools::write_PACKAGES("public/src/contrib", fields="Revision")'
       - name: upload
         if: github.ref == 'refs/heads/master'
-        uses: actions/upload-pages-artifact@v3
+        uses: actions/upload-pages-artifact@v4
         with:
           path: "public"
       - name: deploy
diff --git a/github-actions/data.table/rchk.yaml b/github-actions/data.table/rchk.yaml
@@ -33,7 +33,7 @@ jobs:
   rchk:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
       - uses: r-lib/actions/setup-r@v2
         with:
             r-version: 'devel'
diff --git a/github-actions/data.table/test-coverage.yaml b/github-actions/data.table/test-coverage.yaml
@@ -29,7 +29,7 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
 
       - uses: r-lib/actions/setup-r@v2
         with:
@@ -61,7 +61,7 @@ jobs:
 
       - name: Upload test results
         if: failure()
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v6
         with:
           name: coverage-test-failures
           path: ${{ runner.temp }}/package
diff --git a/github-actions/ggstatsplot/pre-commit.yaml b/github-actions/ggstatsplot/pre-commit.yaml
@@ -25,4 +25,4 @@ jobs:
       - name: Run pre-commit
         uses: pre-commit/action@v3.0.1
 
-      - uses: stefanzweifel/git-auto-commit-action@v7.0.0
+      - uses: stefanzweifel/git-auto-commit-action@v7.1.0
diff --git a/github-actions/ggstatsplot/styler.yaml b/github-actions/ggstatsplot/styler.yaml
@@ -63,4 +63,4 @@ jobs:
           styler::style_pkg()
         shell: Rscript {0}
 
-      - uses: stefanzweifel/git-auto-commit-action@v7.0.0
+      - uses: stefanzweifel/git-auto-commit-action@v7.1.0
diff --git a/github-actions/magick/R-CMD-check.yaml b/github-actions/magick/R-CMD-check.yaml
@@ -16,8 +16,8 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: macOS-13,   r: 'release'}
-          - {os: macOS-14,   r: 'release'}
+          - {os: macOS-15-intel,   r: 'release'}
+          - {os: macOS-15,         r: 'release'}
           - {os: windows-latest, r: '4.1'}
           - {os: windows-latest, r: '4.2'}
           - {os: windows-latest, r: '4.3'}
diff --git a/github-actions/mlflow/protobuf-cross-test.yml b/github-actions/mlflow/protobuf-cross-test.yml
@@ -60,28 +60,22 @@ jobs:
       - uses: ./.github/actions/setup-java
       - name: Install dependencies
         run: |
-          pip install -U pip setuptools wheel
-          pip install tests/resources/mlflow-test-plugin
-          pip install .[extras,genai,mcp]
-          pip install pyspark
-          # Install Hugging Face datasets to test Hugging Face usage with MLflow dataset tracking
-          pip install datasets
-          # Install TensorFlow to test TensorFlow dataset usage with MLflow dataset tracking
-          # tensorflow >= 2.22.0 are incompatible with protobuf < 5
-          pip install 'tensorflow<2.22.0' 'tf-keras<2.20.0'
-          # Install torch and transformers to test metrics
-          pip install torch transformers
-          pip install -r requirements/test-requirements.txt
+          uv sync --extra extras --extra genai --extra mcp
           # Test the latest minor version in protobuf_major_version
-          pip install "protobuf==${{ matrix.protobuf_major_version }}.*"
+          uv pip install \
+            -r requirements/test-requirements.txt \
+            datasets \
+            'tensorflow<2.22.0' 'tf-keras<2.20.0' \
+            torch transformers \
+            "protobuf==${{ matrix.protobuf_major_version }}.*"
       - uses: ./.github/actions/show-versions
       - uses: ./.github/actions/pipdeptree
       - name: Run tests
         run: |
           # NB: test_mlflow_artifacts.py is excluded because it runs docker-compose with fresh
           # container builds. The protobuf version in the test environment has no effect on the
           # containers, making cross-version testing unnecessary and wasteful of disk space.
-          pytest --splits=${{ matrix.splits }} --group=${{ matrix.group }} \
+          uv run --no-sync pytest --splits=${{ matrix.splits }} --group=${{ matrix.group }} \
             --ignore-flavors \
             --ignore=tests/projects \
             --ignore=tests/examples \
diff --git a/github-actions/testthat/R-CMD-check.yaml b/github-actions/testthat/R-CMD-check.yaml
@@ -58,7 +58,9 @@ jobs:
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::rcmdcheck
+          extra-packages: |
+            any::rcmdcheck
+            otelsdk=?ignore-before-r=4.3.0
           needs: check
 
       - uses: r-lib/actions/check-r-package@v2
diff --git a/gitlab-ci/data.table.gitlab-ci.yml b/gitlab-ci/data.table.gitlab-ci.yml
@@ -10,8 +10,7 @@ variables:
   _R_CHECK_NO_STOP_ON_TEST_ERROR_: "true"
   _R_CHECK_SYSTEM_CLOCK_: "false"  ## https://stackoverflow.com/questions/63613301/r-cmd-check-note-unable-to-verify-current-time
   _R_CHECK_TESTS_NLINES_: "0"
-  TZ: "UTC"  ## to avoid 'Failed to create bus connection' from timedatectl via Sys.timezone() on Docker with R 3.4.
-             ## Setting TZ for all GLCI jobs to isolate them from timezone. We could have a new GLCI job to test under
+  TZ: "UTC"  ## Setting TZ for all GLCI jobs to isolate them from timezone. We could have a new GLCI job to test under
              ## a non-UTC timezone, although, that's what we do routinely in dev.
   RUN_ALL_DATATABLE_TESTS: "yes"  ## run optional tests in CI
   R_REL_VERSION:  "4.5" # only raise when RTOOLS for REL is available
@@ -49,9 +48,6 @@ mirror-packages:
   cache:
     paths:
       - bus/$CI_JOB_NAME/cran
-  variables:
-    # TODO(R-ancient>=3.5.0): remove this; let it save PACKAGES.rds in version-3 format
-    R_DEFAULT_SERIALIZE_VERSION: 2
   script:
     - echo 'source(".ci/ci.R")' >> .Rprofile
     - mkdir -p bus/$CI_JOB_NAME/cran/src/contrib
@@ -211,7 +207,7 @@ test-lin-dev-clang-cran:
 # stated dependency on R
 test-lin-ancient-cran:
   <<: *test-lin
-  image: registry.gitlab.com/rdatatable/dockerfiles/r-3.4.0
+  image: registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0
   variables:
     _R_CHECK_FORCE_SUGGESTS_: "FALSE" # can be removed if all dependencies are available (knitr, xts, etc.)
   script:
diff --git a/make/data.table-Makefile b/make/data.table-Makefile
@@ -18,7 +18,7 @@ some:
 
 .PHONY: clean
 clean:
-	$(RM) data.table_1.17.99.tar.gz
+	$(RM) data.table_1.18.99.tar.gz
 	$(RM) src/*.o
 	$(RM) src/*.so
 
@@ -28,7 +28,7 @@ build:
 
 .PHONY: install
 install:
-	$(R) CMD INSTALL data.table_1.17.99.tar.gz
+	$(R) CMD INSTALL data.table_1.18.99.tar.gz
 
 .PHONY: uninstall
 uninstall:
@@ -40,7 +40,7 @@ test:
 
 .PHONY: check
 check:
-	_R_CHECK_CRAN_INCOMING_REMOTE_=false $(R) CMD check data.table_1.17.99.tar.gz --as-cran --ignore-vignettes --no-stop-on-test-error
+	_R_CHECK_CRAN_INCOMING_REMOTE_=false $(R) CMD check data.table_1.18.99.tar.gz --as-cran --ignore-vignettes --no-stop-on-test-error
 
 .PHONY: revision
 revision:
diff --git a/rbuildignore/stars.Rbuildignore b/rbuildignore/stars.Rbuildignore
@@ -27,3 +27,4 @@ vignettes.awk
 ^codecov\.yml$
 vignettes/sst.tif
 _pkgdown.yml
+revdep
