Tomogram import bugfixes (#15)

- Resolves #14 

General:
-Updated Doxyfile to use relative pathnames for the input and output directories instead of full paths
-Updated Changelog with changes in preparation for bugfix release
-Updated namespace variable Current_version to v4.0.1
-Updated Doxygen documentation for v4.0.1

Morphology class:
-Updated importTomogramMorphologyFile function to open the file as a binary file to fix file read error when compiled on Windows
-Updated importTomogramMorphologyFile function by fixing error in how the parameters for the sublattice were determined that was causing an error loading tomogram files due to incorrect lattice parameters

Author: MikeHeiber

CHANGELOG.md

@@ -8,9 +8,20 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [v4.0.1] - 2018-12-12 - Tomogram Import Bugfix
+
 ### Added
 - README.md - Link to JOSS paper
 
+### Changed
+- Doxyfile - Updated file input and output paths to relative paths
+- Version - Updated Current_version namespace variable to v4.0.1
+- Updated Doxygen documentation
+
+### Fixed
+- Morphology (importTomogramMorphologyFile) - Corrected error loading xml metadata files on Windows by telling the fopen function to open the file as a binary file
+- Morphology (importTomogramMorphologyFile) - Corrected miscalculation of the extracted sublattice dimensions that was causing some tomogram files not to be imported
+
 ## [v4.0.0] - 2018-11-29 - Final Release
 
 This release only changes documentation files and does not contain modifications to the source code.

Doxyfile

@@ -58,7 +58,7 @@ PROJECT_LOGO           =
 # entered, it will be relative to the location where doxygen was started. If
 # left blank the current directory will be used.
 
-OUTPUT_DIRECTORY       = Z:\Software_Projects\Github\Ising_OPV\
+OUTPUT_DIRECTORY       = docs
 
 # If the CREATE_SUBDIRS tag is set to YES then doxygen will create 4096 sub-
 # directories (in 2 levels) under the output directory of each output format and
@@ -790,8 +790,7 @@ WARN_LOGFILE           =
 # spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
 # Note: If this tag is empty the current directory is searched.
 
-INPUT                  = Z:\Software_Projects\Github\Ising_OPV\src \
-                         Z:\Software_Projects\Github\Ising_OPV\
+INPUT                  = .
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses