pyproject.toml

[project]
name = "PanelGeneMapper"
dynamic = ["version"]
description = "A tool to integrate PanelApp data with patient lab systems, enabling gene panel management and BED file generation."
license = {file = "LICENSE.txt"}
authors = [
    {name = "Nour Mahfel", email = "nour.mahfel@postgrad.manchester.ac.uk"},
    {name = "Milad Ebrahimian", email = "milad.ebrahimian@postgrad.manchester.ac.uk"},
    {name = "Karolina Janik", email = "karolina.janik@postgrad.manchester.ac.uk"},
    {name = "Mary Murray", email = "mary.murray-2@postgrad.manchester.ac.uk"},
    {name = "Limia Varghese", email = "limia.varghese@postgrad.manchester.ac.uk"}
]
readme = "README.md"
keywords = ["bioinformatics", "genomics", "gene panels", "bed files", "panelapp"]
requires-python = ">=3.9"

dependencies = [
    "flask==2.3.3",
    "flask-restx==1.1.0",
    "requests==2.32.3",
    "pandas==2.2.3",
    "pytest==8.3.4",
    "pytest-cov==3.0.0",
    "pytest-xdist==2.5.0",
    "requests-mock==1.11.0",
    "filelock==3.12.2",
    "sqlalchemy==2.0.36",
    "python-dateutil==2.9.0.post0",
    "python-json-logger==2.0.7",
    "pytz==2024.1",
    "appdirs==1.4.4",
    "flask_sqlalchemy==3.0.0",
]

classifiers = [
    "Development Status :: 5 - Production/Stable",
    "Intended Audience :: Developers",
    "License :: OSI Approved :: MIT License",
    "Programming Language :: Python :: 3.9",
    ]

[project.urls]
"Homepage" = "https://github.com/Miladeb77/Y2_Genepanel_project.git"
"Source" = "https://github.com/Miladeb77/Y2_Genepanel_project"
"Bug Reports" = "https://github.com/Miladeb77/Y2_Genepanel_project/logs"

[tool.setuptools.packages.find]
where = ["."]               
include = [
    "PanelGeneMapper*",     
    "configuration",        
    "databases",            
    "archive_databases"     
]
exclude = [
    "tests"                 
]

[build-system]
requires = ["setuptools>=45", "wheel"]
build-backend = "setuptools.build_meta"