galaxytools/tools/vrhyme/test-data/output_coverage-table/log_vRhyme_example_scaffolds.log at fa1e429b982989be23ddcbee4237bef64dd86b74 · Minamehr/galaxytools · GitHub

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Command:  /usr/local/bin/vRhyme -i /tmp/tmpotozv0b0/files/8/3/d/dataset_83df77e8-a4c9-46b0-b633-114fb5c21d74.dat -o output_dir -t 1 -g /tmp/tmpotozv0b0/files/0/0/8/dataset_008e4fd2-3980-4e3d-bd5f-3020cf0fe335.dat -p /tmp/tmpotozv0b0/files/4/4/1/dataset_441f8fc8-519a-43f4-bfa1-3e4a7a47d9a0.dat -c /tmp/tmpotozv0b0/files/5/3/3/dataset_533e8f0c-6cb1-4d62-a539-c670773791b7.dat -l 2000

Date:     2025-04-02 (y-m-d)
Start:    16:27:22   (h:m:s)
Program:  vRhyme v1.1.0


Time (min) |  Log
--------------------------------------------------------------------
0.0           Initializing and validating vRhyme parameters
0.01          Performing pairwise coverage comparisons
0.03          Generating codon usage features
0.03          Generating nucleotide features
0.04          Performing pairwise distance calculations
0.04          Performing machine learning classification
0.05          Generating networks of bins
0.15          Extracting information for all possible unique bins
0.15          Running mmseqs2 linclust for bin redundancy scoring
0.15          Parsing linclust protein clusters
0.15          Scoring all possible unique bins
0.15          Identifying best set of bins from 20 iterations
0.15          Extracting binning summary statistics for each iteration
0.15          Writing finalized bin sequences to individual fasta files
0.15          vRhyme binning complete

Memory usage:       0.45
Runtime (min):      0.15
Bins generated:     2
Binned sequences:   9 (90.0%)
Input sequences:    10
Binned proteins:    139
Redundant proteins: 0 (0.0%)
Best iteration:     0
vRhyme score:       0.8506


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