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Updated singularity containers
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config/nextflow_config/singularity.config

Lines changed: 7 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -5,25 +5,25 @@ singularity {
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process {
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withName: 'FASTQC' {
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container = 'https://depot.galaxyproject.org/singularity/fastqc:0.11.9--hdfd78af_1'
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container = 'https://depot.galaxyproject.org/singularity/fastqc:0.12.1--hdfd78af_0'
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}
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withName: 'FASTQ_SCREEN' {
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container = 'https://depot.galaxyproject.org/singularity/fastq-screen:0.14.0--pl5262hdfd78af_1'
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container = 'https://depot.galaxyproject.org/singularity/fastq-screen:0.16.0--pl5321hdfd78af_0'
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}
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withName: 'GET_QC_THRESHOLDS' {
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container = 'https://depot.galaxyproject.org/singularity/checkqc:3.6.6--pyhdfd78af_0'
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container = 'https://depot.galaxyproject.org/singularity/checkqc:4.0.7--pyhdfd78af_0'
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}
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withName: 'GET_METADATA' {
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container = 'https://depot.galaxyproject.org/singularity/checkqc:3.6.6--pyhdfd78af_0'
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container = 'https://depot.galaxyproject.org/singularity/checkqc:4.0.7--pyhdfd78af_0'
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}
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withName: 'INTEROP_SUMMARY' {
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container = 'https://depot.galaxyproject.org/singularity/illumina-interop:1.2.4--hdbdd923_2'
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container = 'https://depot.galaxyproject.org/singularity/illumina-interop:1.5.0--h503566f_0'
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}
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withName: 'MULTIQC_PER_FLOWCELL' {
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container = 'https://depot.galaxyproject.org/singularity/multiqc:1.21--pyhdfd78af_0'
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container = 'https://depot.galaxyproject.org/singularity/multiqc:1.32--pyhdfd78af_1'
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}
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withName: 'MULTIQC_PER_PROJECT' {
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container = 'https://depot.galaxyproject.org/singularity/multiqc:1.21--pyhdfd78af_0'
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container = 'https://depot.galaxyproject.org/singularity/multiqc:1.32--pyhdfd78af_1'
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}
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}
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