gha/examples/r-cmd-check.yml at main · Morrison-Lab/gha · GitHub

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# Copy to .github/workflows/r-cmd-check.yml (or R-CMD-check.yaml) in your repo.
#
# Complete reference:
# https://morrison-lab.github.io/gha/reference/r-cmd-check.html
#
# Two jobs: the full OS x R-version matrix, and a hard-dependencies-only
# check that runs only on pull_request. Drop R-CMD-check-hard if you do
# not want that extra job.
#
# Do not key concurrency on github.head_ref alone: it is empty on push,
# so every push across every branch would share one group and cancel
# each other. github.ref is set on both pull_request and push.
name: R-CMD-check

on:
  push:
    branches:
      - main
  pull_request:
  workflow_dispatch:

concurrency:
  group: r-cmd-check-${{ github.ref }}
  cancel-in-progress: true

jobs:
  R-CMD-check:
    uses: Morrison-Lab/gha/.github/workflows/r-cmd-check.yml@v2
    # with:
    #   path: '.'
    #   error-on: '"note"'             # full matrix only; hard job omits this
    #   force-suggests: false          # matches r-lib/check-r-package when unset
    #   cran-incoming-remote: false    # also sets _R_CHECK_CRAN_INCOMING_ (r-lib forces it false when unset)
    #   setup-julia: true              # rpt: julia-actions/setup-julia
    #   install-quarto: true           # rpt: quarto-dev/quarto-actions/setup (skipped on ubuntu when linux-container contains verse)
    #   linux-container: rocker/verse:latest  # rpt: container on ubuntu-latest; ignored by the hard job
    #   checkout-submodules: true      # rpt: actions/checkout submodules: recursive
    #   timeout-minutes: 50            # rpt's hang ceiling; this workflow defaults to 90
    #   extra-packages: local::.       # rpt extra; rcmdcheck is always installed
    # secrets:
    #   SUBMODULES_TOKEN: ${{ secrets.SUBMODULES_TOKEN }}  # only for private submodules
  R-CMD-check-hard:
    uses: Morrison-Lab/gha/.github/workflows/r-cmd-check.yml@v2
    with:
      hard: true
      # Match extras you enable on the full job, except linux-container
      # (the hard job never uses a container: verse would preinstall Suggests).
      # setup-julia: true
      # install-quarto: true
      # checkout-submodules: true
      # extra-packages: local::.
    # secrets:
    #   SUBMODULES_TOKEN: ${{ secrets.SUBMODULES_TOKEN }}