Add macros submodule, open PR in d-morrison/macros, and checkout submodule in Copilot setup
#35
Workflow file for this run
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| # GitHub Copilot Setup Steps for qwt | |
| # | |
| # This workflow configures the GitHub Copilot coding agent's environment | |
| # by preinstalling R, Quarto, TinyTeX, and system dependencies. | |
| # | |
| # See: https://docs.github.com/en/copilot/how-tos/use-copilot-agents/coding-agent/customize-the-agent-environment | |
| # | |
| # This workflow sets up: | |
| # - Quarto CLI for rendering | |
| # - TinyTeX for PDF output | |
| name: "Copilot Setup Steps" | |
| # Automatically run the setup steps when they are changed to allow for easy validation, | |
| # and allow manual testing through the repository's "Actions" tab | |
| on: | |
| workflow_dispatch: | |
| push: | |
| paths: | |
| - .github/workflows/copilot-setup-steps.yml | |
| pull_request: | |
| paths: | |
| - .github/workflows/copilot-setup-steps.yml | |
| jobs: | |
| # The job MUST be called `copilot-setup-steps` or it will not be picked up by Copilot. | |
| copilot-setup-steps: | |
| runs-on: ubuntu-latest | |
| # Set the permissions to the lowest permissions possible needed for your steps. | |
| # Copilot will be given its own token for its operations. | |
| permissions: | |
| contents: read | |
| # Timeout after 55 minutes (max is 59 for copilot-setup-steps) | |
| timeout-minutes: 55 | |
| steps: | |
| # Checkout code - Copilot will do this automatically if we don't, | |
| # but we need it for any repository-specific setup | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| # Install system dependencies required for R packages | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y \ | |
| libcurl4-openssl-dev \ | |
| libssl-dev \ | |
| libxml2-dev \ | |
| libfontconfig1-dev \ | |
| libharfbuzz-dev \ | |
| libfribidi-dev \ | |
| libfreetype6-dev \ | |
| libpng-dev \ | |
| libtiff5-dev \ | |
| libjpeg-dev | |
| # Set up pandoc for documentation | |
| - name: Set up Pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| # Set up R using the standard GitHub Actions setup | |
| # Using 'release' to get the latest R version | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: 'release' | |
| use-public-rspm: true | |
| # Install R packages needed for linting and Quarto rendering | |
| - name: Install R packages | |
| run: | | |
| install.packages( | |
| c("lintr", "rmarkdown"), | |
| repos = "https://packagemanager.posit.co/cran/__linux__/noble/latest" | |
| ) | |
| shell: Rscript {0} | |
| # Set up Quarto - required for rendering the website | |
| - name: Set up Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| with: | |
| tinytex: true | |
| # Verify development environment is properly configured | |
| - name: Verify development environment | |
| run: | | |
| echo "=== Development Environment Status ===" | |
| # Check R installation | |
| Rscript -e 'cat("R version:", R.version.string, "\n")' | |
| # Verify Quarto is installed and working | |
| echo "" | |
| echo "=== Quarto Status ===" | |
| quarto --version | |
| quarto list tools | |
| echo "" | |
| echo "Development environment setup complete!" | |
| - name: Create PR in d-morrison/macros for pending Copilot branch | |
| env: | |
| GH_TOKEN: ${{ secrets.MACROS_REPO_PAT }} | |
| run: | | |
| if [ -z "${GH_TOKEN:-}" ]; then | |
| echo "MACROS_REPO_PAT is not set; skipping macros PR creation." | |
| exit 0 | |
| fi | |
| branch="copilot/add-summary-stat-macros" | |
| if ! gh api "repos/d-morrison/macros/git/ref/heads/${branch}" --silent 2>/dev/null; then | |
| echo "Branch ${branch} not found in d-morrison/macros; skipping." | |
| exit 0 | |
| fi | |
| existing=$(gh pr list \ | |
| --repo d-morrison/macros \ | |
| --head "$branch" \ | |
| --base main \ | |
| --json number \ | |
| --jq '.[0].number') | |
| if [ -n "$existing" ]; then | |
| echo "PR #$existing already exists for ${branch} -- nothing to do." | |
| exit 0 | |
| fi | |
| body=$(printf '%s\n' \ | |
| 'Adds commonly-used summary statistic macros that were missing:' \ | |
| '' \ | |
| '- \Cort, \Cor{x}, \Corf{x}, \Cors{x}{y} -- correlation operator and functions' \ | |
| '- \hcort, \hCor{x}, \hCorf{x}, \hCors{x}{y} -- estimated (hat) correlation' \ | |
| '- \med, \medf{x} -- median operator and function' \ | |
| '- \IQR, \IQRf{x} -- interquartile range operator and function' \ | |
| '' \ | |
| 'These follow the same naming conventions as the existing \Var, \Cov, and \SD macros.') | |
| gh pr create \ | |
| --repo d-morrison/macros \ | |
| --base main \ | |
| --head "$branch" \ | |
| --title "feat: add correlation, median, and IQR macros" \ | |
| --body "$body" \ | |
| --draft | |
| echo "PR created in d-morrison/macros." |