Merge branch 'main' of https://github.com/mouseland/facemap into main

Author: carsen-stringer

facemap/gui/gui.py

@@ -74,7 +74,7 @@ def __init__(
         QtCore.QCoreApplication.setApplicationName("Facemap")
 
         pg.setConfigOptions(imageAxisOrder="row-major")
-        self.setGeometry(15, 5, 1470, 800)#(55, 5, 1470, 800)
+        self.setGeometry(15, 5, 1700, 800)#(55, 5, 1470, 800)
         self.setWindowTitle("Facemap")
         self.setStyleSheet("QMainWindow {background: 'black';}")
         self.styleUnpressed = (
@@ -120,7 +120,7 @@ def __init__(
         self.central_widget.setLayout(self.scene_grid_layout)
         # --- cells image
         self.sizeObject = QtGui.QGuiApplication.primaryScreen().availableGeometry()
-        self.resize(self.sizeObject.width(), self.sizeObject.height())
+        #self.resize(self.sizeObject.width(), self.sizeObject.height())
 
         self.video_window = pg.GraphicsLayoutWidget()
         self.video_window.viewport().setAttribute(QtCore.Qt.WidgetAttribute.WA_AcceptTouchEvents, False)
@@ -385,7 +385,10 @@ def dropEvent(self, event):
             url = event.mimeData().urls()[0]
             if url.isLocalFile() and url.toString().endswith(('.mp4', '.avi')):
                 video_path = url.toLocalFile()
-                io.open_file(self, (video_path, 'Movie files (*.h5 *.mj2 *.mp4 *.mkv *.avi *.mpeg *.mpg *.asf *m4v)'))
+                io.open_file(self, (video_path, 'Movie files (*.h5 *.mj2 *.mp4 *.mkv *.avi *.mpeg *.mpg *.asf *.m4v)'))
+            elif url.isLocalFile() and url.toString().endswith((".npy", ".mat")):
+                proc_path = url.toLocalFile()
+                io.open_proc(self, proc_path)
 
     def make_buttons(self):
         # ~~~~~~~~~~~~~~~~~~~~~~~~ SVD variables ~~~~~~~~~~~~~~~~~~~~~~~~
@@ -1235,16 +1238,15 @@ def process_batch(self):
         print(files)
         for file_idx, f in enumerate(files):
             proc = np.load(f, allow_pickle=True).item()
-            if proc["motSVD"] or proc["movSVD"]:
-                savename = process.run(
-                    proc["filenames"],
-                    motSVD=proc["motSVD"],
-                    movSVD=proc["movSVD"],
-                    GUIobject=QtWidgets,
-                    proc=proc,
-                    savepath=proc["save_path"],
-                )
-                self.update_status_bar("Processed " + savename)
+            savename = process.run(
+                proc["filenames"],
+                motSVD=proc["motSVD"],
+                movSVD=proc["movSVD"],
+                GUIobject=QtWidgets,
+                proc=proc,
+                savepath=proc["save_path"],
+            )
+            self.update_status_bar("Processed " + savename)
             if self.keypoints_checkbox.isChecked():
                 self.filenames = proc["filenames"]
                 self.bbox = proc["pose_settings"]["bbox"]

facemap/gui/io.py

@@ -185,6 +185,7 @@ def open_proc(parent, file_name=None):
                         parent.sigma_box.setText(str(r["pupil_sigma"]))
                     else:
                         psig = None
+                    
                     parent.ROIs.append(
                         roi.sROI(
                             rind=r["rind"],
@@ -201,8 +202,6 @@ def open_proc(parent, file_name=None):
                             ivid=r["ivid"],
                         )
                     )
-                    parent.update_ROI_vis_comboBox()
-                    parent.ROIs[-1].position(parent)
 
                     if "reflector" in r:
                         for i, reflector_roi in enumerate(r["reflector"]):
@@ -214,17 +213,19 @@ def open_proc(parent, file_name=None):
                                 reflector_roi["xrange"][-1]
                                 - reflector_roi["xrange"][0],
                             ]
-                            parent.rROI[-1].append(
-                                roi.reflectROI(
+                            parent.rROI[-1].append(roi.reflectROI(
                                     iROI=r["iROI"],
                                     wROI=i,
                                     pos=pos,
                                     parent=parent,
                                     yrange=reflector_roi["yrange"],
                                     xrange=reflector_roi["xrange"],
                                     ellipse=reflector_roi["ellipse"],
-                                )
-                            )
+                                ))
+
+                    parent.update_ROI_vis_comboBox()
+                    parent.ROIs[-1].position(parent)
+
                     if parent.fullSVD:
                         parent.iROI = k - 1
                     else:

facemap/gui/ops_user.npy

@@ -710,6 +710,7 @@ def run(
     Lybin, Lxbin, iinds = binned_inds(Ly, Lx, sbin)
     LYbin, LXbin, sybin, sxbin = utils.video_placement(Lybin, Lxbin)
 
+    # number of mot/mov ROIs
     nroi = 0
     if rois is not None:
         for r in rois:

facemap/process.py

@@ -756,5 +756,5 @@ def svdecon(X, k=100):
     """
     U, Sv, V = PCA(
         n_components=k, svd_solver="randomized", random_state=np.random.RandomState(0)
-    )._fit(X)
+    )._fit(X)[:3]
     return U, Sv, V

facemap/utils.py

@@ -4,12 +4,12 @@
 import setuptools
 
 install_deps = [
-    "numpy>=1.16",
+    "numpy>=1.16,<2.0",
     "scipy",
     "natsort",
     "tqdm",
     "numba>=0.43.1",
-    "opencv-python-headless",
+    "opencv-python-headless<4.10",
     "torch>=1.9",
     "h5py",
     "scikit-learn",