collect_skeleton_txts_for_2018_10_01.m

sample_date = '2018-10-01' ;
% whole_brain_h5_p_map_file_path = ...
%     sprintf('/nrs/mouselight/cluster/classifierOutputs/%s/20181001_prob0/20181001_prob0_lev-6_chunk-111_111_masked-0.h5', ...
%             sample_date) ;
whole_brain_p_map_h5_file_path = ...
    sprintf('/groups/mousebrainmicro/mousebrainmicro/cluster/Reconstructions/%s/whole-brain-p-map-as-h5/whole-brain-p-map.h5', sample_date) ;
reconstructions_folder_path = sprintf('/groups/mousebrainmicro/mousebrainmicro/cluster/Reconstructions/%s', ...
                                      sample_date) ;
skeletonization_folder_path = fullfile(reconstructions_folder_path, 'skeletonization') ;
graph_as_mat_file_path = fullfile(reconstructions_folder_path, 'skeleton-graph.mat') ;
graph_as_single_text_file_path = fullfile(reconstructions_folder_path, 'skeleton-graph.txt') ;
%graph_as_single_binary_file_path = fullfile(reconstructions_folder_path, 'skeleton-graph.grf') ;

collect_skeleton_txts_given_file_paths(graph_as_mat_file_path, ...
                                       graph_as_single_text_file_path, ...
                                       whole_brain_p_map_h5_file_path, ...
                                       skeletonization_folder_path) ;