skeletonize_2020_04_15.m

sample_date = '2020-04-15' ;
output_folder_path = sprintf('/groups/mousebrainmicro/mousebrainmicro/cluster/Reconstructions/%s/skeletonization', sample_date) ;
whole_brain_p_map_h5_file_path = ...
    sprintf('/groups/mousebrainmicro/mousebrainmicro/cluster/Reconstructions/%s/whole-brain-p-map-as-h5/whole-brain-p-map.h5', sample_date) ;

sizethreshold = 300 ;
probThr = 100 ;
fullh = 15 ;

do_actually_submit = true ;
maximum_running_slot_count = 1600 ;

submit_bsub_jobs_for_skeletonization_from_paths(output_folder_path, ...
                                                whole_brain_p_map_h5_file_path, ...
                                                sizethreshold, ...
                                                probThr, ...
                                                fullh, ...
                                                do_actually_submit, ...
                                                maximum_running_slot_count) ;