Run pre-commit

Author: ewels

.devcontainer/Dockerfile

@@ -10,4 +10,4 @@ RUN curl -L -o /usr/local/bin/pixi -fsSL --compressed "https://github.com/prefix
 USER vscode
 WORKDIR /home/vscode
 
-RUN echo 'eval "$(pixi completion -s bash)"' >> /home/vscode/.bashrc
+RUN echo 'eval "$(pixi completion -s bash)"' >> /home/vscode/.bashrc

.devcontainer/devcontainer.json

@@ -1,24 +1,17 @@
 {
-    "name": "MultiQC_SAV Dev Container",
-    "runArgs": ["--platform=linux/amd64" ],
-    "build": {
-        "dockerfile": "Dockerfile",
-        "context": ".."
-    },
-    "customizations": {
-        "vscode": {
-            "settings": {},
-            "extensions": [
-                "ms-python.python",
-                "charliermarsh.ruff",
-                "GitHub.copilot"
-            ]
-        }
-    },
-    "features": {
-    },
-    "mounts": [
-        "source=${localWorkspaceFolderBasename}-pixi,target=${containerWorkspaceFolder}/.pixi,type=volume"
-    ],
-    "postCreateCommand": "sudo chown vscode .pixi && pixi install"
-}
+  "name": "MultiQC_SAV Dev Container",
+  "runArgs": ["--platform=linux/amd64"],
+  "build": {
+    "dockerfile": "Dockerfile",
+    "context": ".."
+  },
+  "customizations": {
+    "vscode": {
+      "settings": {},
+      "extensions": ["ms-python.python", "charliermarsh.ruff", "GitHub.copilot"]
+    }
+  },
+  "features": {},
+  "mounts": ["source=${localWorkspaceFolderBasename}-pixi,target=${containerWorkspaceFolder}/.pixi,type=volume"],
+  "postCreateCommand": "sudo chown vscode .pixi && pixi install"
+}

.vscode/settings.json

@@ -1,4 +1,4 @@
 {
     "python-envs.defaultEnvManager": "ms-python.python:system",
     "python-envs.pythonProjects": []
-}
+}

CLAUDE.md

@@ -148,6 +148,7 @@ SAV = "multiqc_sav.modules.sav.sav:SAVModule"
 ## Testing
 
 Tests are run via GitHub Actions on Python 3.11, 3.12, and 3.13. Each test:
+
 1. Runs MultiQC with the SAV module on test data
 2. Verifies that `multiqc_report.html` is generated
 3. Checks that the SAV module appears in the log

pyproject.toml

@@ -31,7 +31,7 @@ classifiers = [
     "Topic :: Scientific/Engineering",
     "Topic :: Scientific/Engineering :: Bio-Informatics",
     "Topic :: Scientific/Engineering :: Visualization",
-]       
+]
 requires-python = ">=3.9"
 dependencies = [
     "multiqc>=1.25",