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config.yml
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212 lines (209 loc) · 5.9 KB
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urls:
string_protein_url: https://stringdb-static.org/download/protein.info.v11.5/TAXID.protein.info.v11.5.txt.gz
string_COG_url: https://stringdb-static.org/download/COG.links.detailed.v11.5.txt.gz
string_alias_url: https://stringdb-static.org/download/protein.aliases.v11.5/TAXID.protein.aliases.v11.5.txt.gz
eggNOG_members_url: http://eggnog5.embl.de/download/eggnog_5.0/per_tax_level/2759/2759_members.tsv.gz
string_ppi_url: https://stringdb-static.org/download/protein.links.detailed.v11.5/HOST.protein.links.detailed.v11.5.txt.gz
string_go_url: https://stringdb-static.org/download/protein.enrichment.terms.v11.5/TAXID.protein.enrichment.terms.v11.5.txt.gz
go_ontology_url: http://current.geneontology.org/ontology/go.obo
3did_domain_pairs_url: https://3did.irbbarcelona.org/download/current/3did_flat.gz
hpa_single_cell_tissue_url: https://www.proteinatlas.org/download/rna_single_cell_type_tissue.tsv.zip
hosts:
9606:
label: Homo sapiens
color: "#525252"
tissues_url: https://download.jensenlab.org/human_tissue_experiments_full.tsv
compartments_url: https://download.jensenlab.org/human_compartment_integrated_full.tsv
tissues:
"BTO:0000648": intestine
"BTO:0001253": skin
"BTO:0000089": blood
"BTO:0000840": nose
"BTO:0001090": mouth
"BTO:0001202": saliva
"BTO:0000759": liver
"BTO:0001281": spleen
"BTO:0000141": bone marrow
"BTO:0000439": eye
"BTO:0000763": lung
"BTO:0000887": muscle
"BTO:0000142": brain
"BTO:0000562": heart
"BTO:0001078": placenta
"BTO:0003091": urogenital system
"BTO:0000784": lymph node
"BTO:0001279": spinal cord
"BTO:0000511": gastrointestinal tract
"BTO:0000671": kidney
"BTO:0000123": bladder
parasites:
5759:
label: Entamoeba histolytica
color: "#b2df8a"
tissues:
- "BTO:0000648"
5741:
label: Giardia intestinalis
color: "#33a02c"
tissues:
- "BTO:0000648"
5664:
label: Leishmania major
color: "#fb9a99"
tissues:
- "BTO:0001253"
- "BTO:0000089"
- "BTO:0000840"
- "BTO:0001090"
- "BTO:0001202"
5671:
label: Leishmania infantum
color: "#e31a1c"
tissues:
- "BTO:0001253"
- "BTO:0000089"
- "BTO:0000759"
- "BTO:0001281"
- "BTO:0000141"
5679:
label: Leishmania panamensis
color: "#ff7f00"
tissues:
- "BTO:0001253"
- "BTO:0000089"
- "BTO:0000759"
- "BTO:0001281"
- "BTO:0000141"
7209:
label: Loa loa
color: "#fdbf6f"
tissues:
- "BTO:0001253"
- "BTO:0000089"
- "BTO:0000439"
5833:
label: Plasmodium falciparum
color: "#6a3d9a"
tissues:
- "BTO:0001253"
- "BTO:0000089"
- "BTO:0000759"
5850:
label: Plasmodium knowlesi
color: "#ffff99"
tissues:
- "BTO:0001253"
- "BTO:0000089"
- "BTO:0000759"
5855:
label: Plasmodium vivax
color: "#b15928"
tissues:
- "BTO:0001253"
- "BTO:0000089"
- "BTO:0000759"
6183:
label: Schistosoma mansoni
color: "#8dd3c7"
tissues:
- "BTO:0001253"
- "BTO:0000089"
- "BTO:0000759"
- "BTO:0000763"
- "BTO:0000648"
5811:
label: Toxoplasma gondii
color: "#fb8072"
tissues:
- "BTO:0000089"
- "BTO:0000887"
- "BTO:0000439"
- "BTO:0000142"
- "BTO:0000562"
- "BTO:0001078"
6334:
label: Trichinella spiralis
color: "#fdb462"
tissues:
- "BTO:0000887"
- "BTO:0000562"
- "BTO:0000763"
- "BTO:0000648"
- "BTO:0000142"
5722:
label: Trichomonas vaginalis
color: "#b3de69"
tissues:
- "BTO:0003091"
5691:
label: Trypanosoma brucei
color: "#bc80bd"
tissues:
- "BTO:0001253"
- "BTO:0000089"
- "BTO:0000784"
- "BTO:0001279"
- "BTO:0000142"
5693:
label: Trypanosoma cruzi
color: "#01665e"
tissues:
- "BTO:0001253"
- "BTO:0000562"
- "BTO:0000089"
- "BTO:0000439"
5808:
label: Cryptosporidium muris
color: "#8c510a"
tissues:
- "BTO:0000511"
- "BTO:0000648"
5865:
label: Babesia bovis
color: "#c51b7d"
tissues:
- "BTO:0000089"
5660:
label: Leishmania braziliensis
color: "#d6604d"
tissues:
- "BTO:0001253"
- "BTO:0000089"
- "BTO:0000840"
- "BTO:0001090"
- "BTO:0001202"
6185:
label: Schistosoma haematobium
color: "#2166ac"
tissues:
- "BTO:0000123"
- "BTO:0001253"
- "BTO:0000089"
- "BTO:0000671"
6182:
label: Schistosoma japonicum
color: "#bcbddc"
tissues:
- "BTO:0001253"
- "BTO:0000089"
- "BTO:0000759"
- "BTO:0000763"
- "BTO:0000648"
6248:
label: Strongyloides stercoralis
color: "#3f007d"
tissues:
- "BTO:0001253"
- "BTO:0000089"
- "BTO:0000763"
- "BTO:0000648"
6211:
label: Echinococcus multilocularis
color: "#9f5511"
tissues:
- "BTO:0000648"
- "BTO:0000089"
- "BTO:0000759"
- "BTO:0000763"
- "BTO:0000142"
- "BTO:0000562"