vuegen/pyproject.toml at main · Multiomics-Analytics-Group/vuegen · GitHub

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[project]
name = "vuegen"
dynamic = ["version"]

[tool.poetry]
description = "VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply provide a directory with output files and VueGen compiles them into a structured report."
authors = ["MoNA group"]
license = "MIT"
readme = "README.md"
repository = "https://github.com/Multiomics-Analytics-Group/vuegen"
# just a placeholder for dynamic versions, see https://pypi.org/project/poetry-dynamic-versioning/
version = "0.0.0"

[tool.poetry.dependencies]
python = ">=3.9,<3.9.7 || >3.9.7,<4.0"
streamlit = "^1.39.0"
streamlit-aggrid = "*"
quarto-cli = "*"
plotly = "^5.15.0"
pyvis = "^0.3.2"
pandas = { extras = ["parquet"], version = "^2.2.2" }
openpyxl = "^3.1.5"
xlrd = "^2.0.1"
nbformat = "^5.10.4"
nbclient = "^0.10.0"
matplotlib = "^3.9.2"
altair = { extras = ["save"], version = "*" }
itables = "^2.2.2"
kaleido = "^0.2.0"
vl-convert-python = "^1.7.0"
dataframe-image = "^0.2.6"
strenum = { version = "^0.4.15", python = "<3.11" }
pyyaml = "^6.0.2"

# optional doc depencencies, follow approach as described here:
# https://github.com/python-poetry/poetry/issues/2567#issuecomment-646766059
sphinx = { version = "*", optional = true }
sphinx-book-theme = { version = "*", optional = true }
myst-nb = { version = "*", optional = true }
ipywidgets = { version = "*", optional = true }
sphinx-new-tab-link = { version = "!=0.2.2", optional = true }
jupytext = { version = "*", optional = true }
customtkinter = { version = "*", optional = true }
sphinx-copybutton = { version = "*", optional = true }

[tool.poetry.group.dev.dependencies]
ipykernel = { version = "^6.29.5", optional = true }

[tool.poetry.requires-plugins]
poetry-dynamic-versioning = { version = ">=1.0.0,<2.0.0", extras = ["plugin"] }

[tool.poetry-dynamic-versioning]
enable = true

[build-system]
requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning>=1.0.0,<2.0.0"]
build-backend = "poetry_dynamic_versioning.backend"

# https://stackoverflow.com/a/60990574/9684872
[tool.poetry.extras]
docs = [
    "sphinx",
    "sphinx-book-theme",
    "myst-nb",
    "ipywidgets",
    "sphinx-new-tab-link",
    "jupytext",
    "sphinx-copybutton",
]
gui = ["customtkinter"]

[tool.poetry.scripts]
# https://python-poetry.org/docs/pyproject/#scripts
vuegen = "vuegen.__main__:main"

[tool.isort]
profile = "black"

[tool.jupytext]
formats = "ipynb,py:percent"

[tool.ruff]
# Allow lines to be as long as:
line-length = 88

[tool.ruff.lint]
# https://docs.astral.sh/ruff/tutorial/#rule-selection
# 1. Enable flake8-bugbear (`B`) rules
# 2. Enable pycodestyle (`E`) errors and (`W`) warnings
# 3. Pyflakes (`F`) errors
extend-select = ["E", "W", 'F', 'B']

[tool.black]
line-length = 88