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emkempemkemp
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Merge pull request #1319 from jvgeiger/feature/appimage_action
Add worklow to build LISF AppImage
2 parents b0ab8e4 + 43c0d4b commit 9f4f5ff

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‎.github/scripts/appimage/AppRun‎

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#!/bin/bash
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SELF=$(readlink -f "${0}")
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HERE=${SELF%/*}
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LISF_LIBS_OPENJPEG=${HERE}/usr/lib/openjpeg/2.4.0_gnu-11.2.0
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LISF_LIBS_ECCODES=${HERE}/usr/lib/eccodes/2.22.0_gnu-11.2.0
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LISF_LIBS_NETCDF=${HERE}/usr/lib/netcdf/4.7.4_gnu-11.2.0
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LISF_LIBS_HDF4=${HERE}/usr/lib/hdf4/4.2.15_gnu-11.2.0
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LISF_LIBS_HDFEOS=${HERE}/usr/lib/hdfeos2/3.0_gnu-11.2.0
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LISF_LIBS_HDF5=${HERE}/usr/lib/hdf5/1.12.0_gnu-11.2.0
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LISF_LIBS_ESMF=${HERE}/usr/lib/esmf/8.1.1_gnu-11.2.0_mpich-3.4
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LISF_LIBS_GDAL=${HERE}/usr/lib/gdal/3.5.2_gnu-11.2.0
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LISF_LIBS_FORTRANGIS=${HERE}/usr/lib/fortrangis/2.6-6_gnu-11.2.0
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LISF_LIBS_LIBGEOTIFF=${HERE}/usr/lib/geotiff/1.7.0_gnu-11.2.0
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LISF_LIBS_PROJ=${HERE}/usr/lib/proj/9.1.0_gnu-11.2.0
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LISF_LIBS_TIFF=${HERE}/usr/lib/tiff/4.0.9_gnu-11.2.0
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LISF_LIBS_PATH=""
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LISF_LIBS_PATH+=":${LISF_LIBS_ECCODES}/lib"
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LISF_LIBS_PATH+=":${LISF_LIBS_NETCDF}/lib"
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LISF_LIBS_PATH+=":${LISF_LIBS_ESMF}/lib/libO/Linux.gfortran.64.mpich3.default"
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LISF_LIBS_PATH+=":${LISF_LIBS_HDF5}/lib"
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LISF_LIBS_PATH+=":${LISF_LIBS_HDF4}/lib"
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LISF_LIBS_PATH+=":${LISF_LIBS_GDAL}/lib"
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LISF_LIBS_PATH+=":${LISF_LIBS_LIBGEOTIFF}/lib"
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LISF_LIBS_PATH+=":${LISF_LIBS_FORTRANGIS}/lib"
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LISF_LIBS_PATH+=":${LISF_LIBS_OPENJPEG}/lib"
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LISF_LIBS_PATH+=":${LISF_LIBS_PROJ}/lib"
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LISF_LIBS_PATH+=":${LISF_LIBS_TIFF}/lib"
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export LISF_LIBS_PATH
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export LANG=C
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export LD_LIBRARY_PATH=${LISF_LIBS_PATH}:${LD_LIBRARY_PATH}
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export ECCODES_DEFINITION_PATH=${LISF_LIBS_ECCODES}/share/eccodes/definitions
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export ECCODES_SAMPLES_PATH=${LISF_LIBS_ECCODES}/share/eccodes/samples
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export PATH=${HERE}/usr/bin:${PATH}
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function lisf_usage {
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NAME="LISF-x86_64.AppImage"
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echo "Usage: $NAME [options] [-- LISF options]"
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echo ""
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echo " where [options] are:"
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echo " -h show this help message"
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echo " -v show revision info about LISF"
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echo " -i show configuration info about LISF"
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echo " -a <LDT|LIS|LVT> specify which app to run"
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echo ""
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echo " where [LISF options] are options to pass to LISF;"
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echo " these must be preceeded by --"
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echo ""
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echo " Examples:"
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echo " $NAME -a LDT ldt.config"
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echo " mpirun -n N $NAME -a LIS -- --file lis.config"
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echo " $NAME -a LVT lvt.config"
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}
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function lisf_version {
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echo "## Revision info"
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echo ""
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cat "${HERE}/info/revision.log"
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}
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function lisf_info {
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lisf_version
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echo ""
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echo "## LDT info"
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echo ""
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echo "### LDT_NetCDF_inc.h"
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cat "${HERE}/info/ldt/LDT_NetCDF_inc.h"
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echo ""
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echo "### LDT_misc.h"
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cat "${HERE}/info/ldt/LDT_misc.h"
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echo ""
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echo "### configure.ldt"
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cat "${HERE}/info/ldt/configure.ldt"
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echo ""
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echo "## LIS info"
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echo ""
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echo "### LIS_NetCDF_inc.h"
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cat "${HERE}/info/lis/LIS_NetCDF_inc.h"
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echo ""
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echo "### LIS_misc.h"
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cat "${HERE}/info/lis/LIS_misc.h"
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echo ""
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echo "### LIS_plugins.h"
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cat "${HERE}/info/lis/LIS_plugins.h"
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echo ""
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echo "### configure.lis"
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cat "${HERE}/info/lis/configure.lis"
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echo ""
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echo "## LVT info"
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echo ""
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echo "### LVT_misc.h"
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cat "${HERE}/info/lvt/LVT_NetCDF_inc.h"
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echo ""
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echo "### LVT_misc.h"
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cat "${HERE}/info/lvt/LVT_misc.h"
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echo ""
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echo "### configure.lvt"
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cat "${HERE}/info/lvt/configure.lvt"
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}
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if [[ ${#} -eq 0 ]]
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then
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lisf_usage
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fi
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optstring=":hvia:"
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while getopts ${optstring} arg
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do
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case ${arg} in
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h)
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lisf_usage
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exit 0
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;;
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v)
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lisf_version
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exit 0
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;;
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i)
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lisf_info
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exit 0
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;;
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a)
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APP="${OPTARG}"
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;;
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?)
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echo "Invalid option: -${OPTARG}"
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echo ""
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lisf_usage
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exit 1
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;;
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esac
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done
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shift $((${OPTIND} - 1))
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exec "${HERE}/usr/bin/${APP}" "${@}"

‎.github/scripts/appimage/Dockerfile‎

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FROM lisf_libraries
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# LISF {{{
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WORKDIR /home/workdir
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COPY LISF ./LISF
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RUN cp ./LISF/.github/scripts/appimage/lisf.env .
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RUN cp ./LISF/.github/scripts/appimage/compile_lisf .
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RUN ./compile_lisf
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# }}}
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# AppImage {{{
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WORKDIR /home/workdir
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COPY ./LISF/.github/scripts/appimage/AppRun .
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COPY ./LISF/.github/scripts/appimage/LISF.png .
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COPY ./LISF/.github/scripts/appimage/LISF.desktop .
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COPY ./LISF/.github/scripts/appimage/prep_appdir .
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RUN ./prep_appdir
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# }}}

‎.github/scripts/appimage/LISF.desktop‎

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[Desktop Entry]
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Name=LISF
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Exec=LISF
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Icon=LISF
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Type=Application
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Categories=Utility;

‎.github/scripts/appimage/LISF.png‎

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‎.github/scripts/appimage/compile_lisf‎

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#!/usr/bin/env bash
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source lisf.env
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cd LISF
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#
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# Revision
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#
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git log -n 1 --oneline --decorate >revision.log
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#
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# LDT
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#
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# Parallelism (0-serial, 1-dmpar, default=0): 0
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# Optimization level (-3=strict checks with warnings, -2=strict checks, -1=debug, 0,1,2,3, default=2): 2
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# Assume little/big_endian data format (1-little, 2-big, default=2): 2
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# Use GRIBAPI/ECCODES? (0-neither, 1-gribapi, 2-eccodes, default=2): 2
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# NETCDF version (3 or 4, default=4)?: 4
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# NETCDF use shuffle filter? (1-yes, 0-no, default = 1): 1
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# NETCDF use deflate filter? (1-yes, 0-no, default = 1): 1
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# NETCDF use deflate level? (1 to 9-yes, 0-no, default = 9): 1
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# Use HDF4? (1-yes, 0-no, default=1): 1
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# Use HDF5? (1-yes, 0-no, default=1): 1
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# Use HDFEOS? (1-yes, 0-no, default=1): 1
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# Enable GeoTIFF support? (1-yes, 0-no, default=1): 1
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# Enable LIBGEOTIFF support? (1-yes, 0-no, default=1): 1
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# Include date/time stamp history? (1-yes, 0-no, default=1): 1
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cd ldt
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printf '%s\n' "0" "2" "2" "2" "4" "1" "1" "1" "1" "1" "1" "1" "1" "1" | ./configure
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./compile -j 2
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#
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# LIS
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#
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# Parallelism (0-serial, 1-dmpar, default=1): 1
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# Optimization level (-3=strict checks with warnings, -2=strict checks, -1=debug, 0,1,2,3, default=2): 2
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# Assume little/big_endian data format (1-little, 2-big, default=2): 2
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# Use GRIBAPI/ECCODES? (0-neither, 1-gribapi, 2-eccodes, default=2): 2
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# Enable AFWA-specific grib configuration settings? (1-yes, 0-no, default=0): 0
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# Use NETCDF? (1-yes, 0-no, default=1): 1
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# NETCDF version (3 or 4, default=4): 4
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# NETCDF use shuffle filter? (1-yes, 0-no, default = 1): 1
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# NETCDF use deflate filter? (1-yes, 0-no, default = 1): 1
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# NETCDF use deflate level? (1 to 9-yes, 0-no, default = 9): 1
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# Use HDF4? (1-yes, 0-no, default=1): 1
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# Use HDF5? (1-yes, 0-no, default=1): 1
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# Use HDFEOS? (1-yes, 0-no, default=1): 1
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# Use MINPACK? (1-yes, 0-no, default=0): 0
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# Use LIS-CRTM? (1-yes, 0-no, default=0): 0
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# Use LIS-CMEM? (1-yes, 0-no, default=0): 0
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# Use LIS-LAPACK? (1-yes, 0-no, default=0): 0
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# Use LIS-MKL-LAPACK? (1-yes, 0-no, default=0): 0
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cd ../lis
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printf '%s\n' "1" "2" "2" "2" "0" "1" "4" "1" "1" "1" "1" "1" "1" "0" "0" "0" "0" "0" | ./configure
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./compile -j 2
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#
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# LVT
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#
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# Optimization level (-3=strict checks with warnings, -2=strict checks, -1=debug, 0,1,2,3, default=2): 2
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# Assume little/big_endian data format (1-little, 2-big, default=2): 2
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# Use GRIBAPI/ECCODES? (1-gribapi, 2-eccodes, default=2): 2
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# Use NETCDF? (1-yes, 0-no, default=1): 1
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# NETCDF version (3 or 4, default=4): 4
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# NETCDF use shuffle filter? (1-yes, 0-no, default = 1): 1
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# NETCDF use deflate filter? (1-yes, 0-no, default = 1): 1
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# NETCDF use deflate level? (1 to 9-yes, 0-no, default = 9): 1
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# Use HDF4? (1-yes, 0-no, default=1): 1
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# Use HDF5? (1-yes, 0-no, default=1): 1
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# Use HDFEOS? (1-yes, 0-no, default=1): 1
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# Enable AFWA-specific grib configuration settings? (1-yes, 0-no, default=0): 0
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# Enable GeoTIFF support? (1-yes, 0-no, default=1): 1
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# Use MATLAB support? (1-yes, 0-no, default=0): 0
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cd ../lvt
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printf '%s\n' "2" "2" "2" "1" "4" "1" "1" "1" "1" "1" "1" "0" "1" "0" | ./configure
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./compile -j 2

‎.github/scripts/appimage/lisf.env‎

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LISF_LIBS_MPICH=/home/workdir/lib/mpich/3.4_gnu-11.2.0
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LISF_LIBS_OPENJPEG=/home/workdir/lib/openjpeg/2.4.0_gnu-11.2.0
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LISF_LIBS_ECCODES=/home/workdir/lib/eccodes/2.22.0_gnu-11.2.0
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LISF_LIBS_NETCDF=/home/workdir/lib/netcdf/4.7.4_gnu-11.2.0
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LISF_LIBS_HDF4=/home/workdir/lib/hdf4/4.2.15_gnu-11.2.0
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LISF_LIBS_HDFEOS=/home/workdir/lib/hdfeos2/3.0_gnu-11.2.0
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LISF_LIBS_HDF5=/home/workdir/lib/hdf5/1.12.0_gnu-11.2.0
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LISF_LIBS_ESMF=/home/workdir/lib/esmf/8.1.1_gnu-11.2.0_mpich-3.4
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LISF_LIBS_PROJ=/home/workdir/lib/proj/9.1.0_gnu-11.2.0
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LISF_LIBS_GDAL=/home/workdir/lib/gdal/3.5.2_gnu-11.2.0
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LISF_LIBS_FORTRANGIS=/home/workdir/lib/fortrangis/2.6-6_gnu-11.2.0
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LISF_LIBS_LIBGEOTIFF=/home/workdir/lib/geotiff/1.7.0_gnu-11.2.0
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LISF_LIBS_TIFF=/home/workdir/lib/tiff/4.0.9_gnu-11.2.0
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LISF_LIBS_PATH="$LISF_LIBS_MPICH/lib"
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LISF_LIBS_PATH+=":$LISF_LIBS_ECCODES/lib"
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LISF_LIBS_PATH+=":$LISF_LIBS_NETCDF/lib"
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LISF_LIBS_PATH+=":$LISF_LIBS_ESMF/lib/libO/Linux.gfortran.64.mpich3.default"
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LISF_LIBS_PATH+=":$LISF_LIBS_HDF5/lib"
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LISF_LIBS_PATH+=":$LISF_LIBS_HDF4/lib"
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LISF_LIBS_PATH+=":$LISF_LIBS_PROJ/lib"
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LISF_LIBS_PATH+=":$LISF_LIBS_GDAL/lib"
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LISF_LIBS_PATH+=":$LISF_LIBS_LIBGEOTIFF/lib"
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LISF_LIBS_PATH+=":$LISF_LIBS_OPENJPEG/lib"
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LISF_LIBS_PATH+=":$LISF_LIBS_TIFF/lib"
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export LISF_LIBS_PATH
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def_lis_jpeg=""
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def_lis_openjpeg=$LISF_LIBS_OPENJPEG
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def_lis_eccodes=$LISF_LIBS_ECCODES
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def_lis_netcdf=$LISF_LIBS_NETCDF
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def_lis_hdf4=$LISF_LIBS_HDF4
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def_lis_hdfeos=$LISF_LIBS_HDFEOS
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def_lis_hdf5=$LISF_LIBS_HDF5
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def_lis_modesmf=$LISF_LIBS_ESMF/mod/modO/Linux.gfortran.64.mpich3.default
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def_lis_libesmf=$LISF_LIBS_ESMF/lib/libO/Linux.gfortran.64.mpich3.default
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def_lis_minpack=""
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def_lis_crtm=""
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def_lis_crtm_prof=""
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def_lis_cmem=""
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def_lis_lapack=""
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def_lvt_gdal=$LISF_LIBS_GDAL
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def_lvt_fortrangis=$LISF_LIBS_FORTRANGIS
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def_ldt_libgeotiff=$LISF_LIBS_LIBGEOTIFF
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export LIS_ARCH=linux_gfortran
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export LIS_SPMD=parallel
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export LIS_FC=mpif90
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export LIS_CC=mpicc
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export LIS_CPPC=mpiCC
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export LIS_JPEG=$def_lis_jpeg
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export LIS_OPENJPEG=$def_lis_openjpeg
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export LIS_ECCODES=$def_lis_eccodes
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export LIS_NETCDF=$def_lis_netcdf
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export LIS_HDF4=$def_lis_hdf4
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export LIS_HDFEOS=$def_lis_hdfeos
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export LIS_HDF5=$def_lis_hdf5
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export LIS_MODESMF=$def_lis_modesmf
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export LIS_LIBESMF=$def_lis_libesmf
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export LIS_MINPACK=$def_lis_minpack
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export LIS_CRTM=$def_lis_crtm
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export LIS_CRTM_PROF=$def_lis_crtm_prof
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export LIS_CMEM=$def_lis_cmem
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export LIS_LAPACK=$def_lis_lapack
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export LDT_ARCH=linux_gfortran
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export LDT_FC=mpif90
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export LDT_CC=mpicc
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export LDT_JPEG=$def_lis_jpeg
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export LDT_OPENJPEG=$def_lis_openjpeg
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export LDT_ECCODES=$def_lis_eccodes
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export LDT_NETCDF=$def_lis_netcdf
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export LDT_HDF4=$def_lis_hdf4
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export LDT_HDFEOS=$def_lis_hdfeos
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export LDT_HDF5=$def_lis_hdf5
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export LDT_MODESMF=$def_lis_modesmf
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export LDT_LIBESMF=$def_lis_libesmf
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export LDT_GDAL=$def_lvt_gdal
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export LDT_FORTRANGIS=$def_lvt_fortrangis
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export LDT_LIBGEOTIFF=$def_ldt_libgeotiff
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export LVT_ARCH=linux_gfortran
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export LVT_FC=mpif90
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export LVT_CC=mpicc
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export LVT_JPEG=$def_lis_jpeg
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export LVT_OPENJPEG=$def_lis_openjpeg
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export LVT_ECCODES=$def_lis_eccodes
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export LVT_NETCDF=$def_lis_netcdf
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export LVT_HDF4=$def_lis_hdf4
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export LVT_HDFEOS=$def_lis_hdfeos
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export LVT_HDF5=$def_lis_hdf5
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export LVT_MODESMF=$def_lis_modesmf
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export LVT_LIBESMF=$def_lis_libesmf
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export LVT_GDAL=$def_lvt_gdal
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export LVT_FORTRANGIS=$def_lvt_fortrangis
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export LANG=C
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export PATH=$LISF_LIBS_MPICH/bin:$PATH
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export LD_LIBRARY_PATH=$LISF_LIBS_PATH:$LD_LIBRARY_PATH
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unset def_lis_jpeg
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unset def_lis_openjpeg
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unset def_lis_eccodes
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unset def_lis_netcdf
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unset def_lis_hdf4
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unset def_lis_hdfeos
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unset def_lis_hdf5
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unset def_lis_modesmf
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unset def_lis_libesmf
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unset def_lis_minpack
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unset def_lis_crtm
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unset def_lis_crtm_prof
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unset def_lis_cmem
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unset def_lis_lapack
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unset def_lvt_gdal
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unset def_lvt_fortrangis
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unset def_ldt_libgeotiff
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unset LISF_LIBS_MPICH
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unset LISF_LIBS_OPENJPEG
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unset LISF_LIBS_ECCODES
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unset LISF_LIBS_NETCDF
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unset LISF_LIBS_HDF4
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unset LISF_LIBS_HDFEOS
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unset LISF_LIBS_HDF5
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unset LISF_LIBS_ESMF
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unset LISF_LIBS_PROJ
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unset LISF_LIBS_GDAL
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unset LISF_LIBS_FORTRANGIS
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unset LISF_LIBS_LIBGEOTIFF
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unset LISF_LIBS_TIFF

‎.github/scripts/appimage/make_appimage‎

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#!/usr/bin/env bash
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sudo docker create --name dummy lisf_appdir
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sudo docker cp dummy:/home/workdir/LISF.AppDir .
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sudo docker rm -f dummy
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sudo appimagetool LISF.AppDir

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