ESMF Installation issue

[gaohongyin]

Hi everyone,
I am trying to install LISF on my workstation with Ubuntu 18.04.
When installing the ESMF library, I can successfully "make all", but when type "make install", it always report error saying

makefile:668: recipe for target 'install' failed
make: *** [install] Error 1

Here is my setting for ESMF:
export ESMF_DIR=/usr/local/esmf/8.1.1/esmf-ESMF_8_1_1
export ESMF_INSTALL_PREFIX=/usr/local/esmf/8.1.1/esmf-ESMF_8_1_1
export ESMF_COMM=mpiuni
export ESMF_COMPILER=gfortran
export ESMF_ABI=64
export ESMF_NETCDF_INCLUDE=/usr/local/netcdf/4.7.4/include
export ESMF_NETCDF_LIBPATH=/usr/local/netcdf/4.7.4/lib
export ESMF_NETCDF_LIBS="-lnetcdf -lnetcdff"
export ESMF_CXXCOMPILER=g++
export ESMF_CXXLINKER=g++
export ESMF_F90COMPILER=gfortran
export ESMF_F90LINKER=gfortran

I've been struggling with this for a long time, I appreciate if anyone can provide help!

[jvgeiger]

Hello. I am unable to see the screenshot that you uploaded. Would you please try again? Or post more of the error message that you get?

[gaohongyin]

Thank you for your reply. When I tried "make check", I got errors as follows:

make[10]: Entering directory '/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/mod/modO/Linux.gfortran.64.openmpi.default'
gfortran -c -O -fPIC -m64 -mcmodel=small -pthread -ffree-line-length-none -fopenmp -I/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/src/Infrastructure/IO/PIO -I/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/build_config/Linux.gfortran.default -I/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/src/Infrastructure -I/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/src/Superstructure -I/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/mod/modO/Linux.gfortran.64.openmpi.default -I/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/src/include -DNO_MPIMOD -DESMF_NO_INTEGER_1_BYTE -DESMF_NO_INTEGER_2_BYTE -DESMF_MOAB=1 -DESMF_LAPACK=1 -DESMF_NO_ACC_SOFTWARE_STACK=1 -DESMF_YAMLCPP=1 -DESMF_YAML=1 -DESMF_PIO=1 -DESMF_MPIIO -DESMF_NO_OPENACC -DESMF_BOPT_O -DESMF_TESTCOMPTUNNEL -DSx86_64_small=1 -DESMF_OS_Linux=1 -DESMF_COMM=openmpi -DESMF_DIR=/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1 /home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/src/Infrastructure/IO/PIO/pio_kinds.F90 -o /home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/obj/objO/Linux.gfortran.64.openmpi.default/pio_kinds.o
/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/src/Infrastructure/IO/PIO/pio_kinds.F90:31: Error: Can't open included file 'mpif.h'
/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/build/common.mk:3718: recipe for target '/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/obj/objO/Linux.gfortran.64.openmpi.default/pio_kinds.o' failed
make[10]: *** [/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/obj/objO/Linux.gfortran.64.openmpi.default/pio_kinds.o] Error 1
make[10]: Leaving directory '/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/mod/modO/Linux.gfortran.64.openmpi.default'
/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/build/common.mk:2173: recipe for target 'esmflib' failed
make[9]: *** [esmflib] Error 2
make[9]: Leaving directory '/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/mod/modO/Linux.gfortran.64.openmpi.default'
/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/build/common.mk:2169: recipe for target 'tree_lib' failed
make[8]: *** [tree_lib] Error 2
make[8]: Leaving directory '/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/src/Infrastructure/IO/PIO'
/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/build/common.mk:3661: recipe for target 'tree' failed
make[7]: *** [tree] Error 1
make[7]: Leaving directory '/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/src/Infrastructure/IO'
/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/build/common.mk:3661: recipe for target 'tree' failed
make[6]: *** [tree] Error 1
make[6]: Leaving directory '/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/src/Infrastructure'
/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/build/common.mk:3661: recipe for target 'tree' failed
make[5]: *** [tree] Error 1
make[5]: Leaving directory '/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/src'
/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/build/common.mk:3661: recipe for target 'tree' failed
make[4]: *** [tree] Error 1
make[4]: Leaving directory '/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1'
/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/build/common.mk:2136: recipe for target 'build_libs' failed
make[3]: *** [build_libs] Error 2
make[3]: Leaving directory '/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1'
/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/build/common.mk:2128: recipe for target 'lib' failed
make[2]: *** [lib] Error 2
make[2]: Leaving directory '/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1'
/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/build/common.mk:2079: recipe for target 'reqfile_libesmf' failed
make[1]: *** [reqfile_libesmf] Error 2
make[1]: Leaving directory '/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1'
/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/build/common.mk:2334: recipe for target 'check' failed
make: *** [check] Error 2

my make information is:
ESMF_VERSION_STRING: 8.1.1
Not a Git repository

---

Make version:
GNU Make 4.1
Built for x86_64-pc-linux-gnu
Copyright (C) 1988-2014 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later http://gnu.org/licenses/gpl.html
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

---

Fortran Compiler version:
GNU Fortran (Ubuntu 11.4.0-2ubuntu1~18.04) 11.4.0
Copyright (C) 2021 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

---

C++ Compiler version:
g++ (Ubuntu 11.4.0-2ubuntu1~18.04) 11.4.0
Copyright (C) 2021 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

---

Preprocessor version:
gcc (Ubuntu 11.4.0-2ubuntu1~18.04) 11.4.0
Copyright (C) 2021 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

---

• User set ESMF environment variables *
  ESMF_ABI=64
  ESMF_COMM=openmpi
  ESMF_COMPILER=gfortran
  ESMF_CXXCOMPILER=g++
  ESMF_CXXLINKER=g++
  ESMF_DIR=/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1
  ESMF_F90COMPILER=gfortran
  ESMF_F90LINKER=gfortran
  ESMF_INSTALL_PREFIX=/usr/local/esmf-8.1.1
  ESMF_LAPACK=netlib
  ESMF_NETCDF_INCLUDE=/usr/local/netcdf4/include
  ESMF_NETCDF_LIBPATH=/usr/local/netcdf4/lib
  ESMF_NETCDF_LIBS=-lnetcdf -lnetcdff
  ESMF_NETCF_LIBS=-lnetcdf -lnetcdff
  PWD=/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1

---

• ESMF environment variables *
  ESMF_DIR: /home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1
  ESMF_OS: Linux
  ESMF_MACHINE: x86_64
  ESMF_ABI: 64
  ESMF_COMPILER: gfortran
  ESMF_BOPT: O
  ESMF_COMM: openmpi
  ESMF_SITE: default
  ESMF_PTHREADS: ON
  ESMF_OPENMP: ON
  ESMF_OPENACC: OFF
  ESMF_CXXSTD: 11
  ESMF_ARRAY_LITE: FALSE
  ESMF_NO_INTEGER_1_BYTE: TRUE
  ESMF_NO_INTEGER_2_BYTE: TRUE
  ESMF_FORTRANSYMBOLS: default
  ESMF_MAPPER_BUILD: OFF
  ESMF_AUTO_LIB_BUILD: ON
  ESMF_DEFER_LIB_BUILD: ON
  ESMF_SHARED_LIB_BUILD: ON
  ESMF_TRACE_LIB_BUILD: ON
  ESMF_TESTEXHAUSTIVE: OFF
  ESMF_TESTCOMPTUNNEL: ON
  ESMF_TESTWITHTHREADS: OFF
  ESMF_TESTMPMD: OFF
  ESMF_TESTSHAREDOBJ: OFF
  ESMF_TESTFORCEOPENMP: OFF
  ESMF_TESTFORCEOPENACC: OFF
  ESMF_TESTHARNESS_ARRAY: default
  ESMF_TESTHARNESS_FIELD: default
  ESMF_MPIRUN: mpirun

---

• ESMF environment variables pointing to 3rd party software *
  ESMF_MOAB: internal
  ESMF_LAPACK: netlib
  ESMF_LAPACK_LIBS: -llapack -lblas
  ESMF_ACC_SOFTWARE_STACK: none
  ESMF_PIO: internal
  ESMF_YAMLCPP: internal

---

• ESMF environment variables for final installation *
  ESMF_INSTALL_PREFIX: /usr/local/esmf-8.1.1
  ESMF_INSTALL_HEADERDIR: include
  ESMF_INSTALL_MODDIR: mod/modO/Linux.gfortran.64.openmpi.default
  ESMF_INSTALL_LIBDIR: lib/libO/Linux.gfortran.64.openmpi.default
  ESMF_INSTALL_BINDIR: bin/binO/Linux.gfortran.64.openmpi.default
  ESMF_INSTALL_DOCDIR: doc

---

• ESMF Benchmark directory and parameters *
  ESMF_BENCHMARK_PREFIX: ./DEFAULTBENCHMARKDIR
  ESMF_BENCHMARK_TOLERANCE: 20%
  ESMF_BENCHMARK_THRESHOLD_MSEC: 500

---

• Other relevant environment variables *
  PATH: /usr/local/geotiff/bin:/usr/local/proj/bin:/usr/local/sqlite3/bin:/usr/local/eccodes/bin:/usr/local/cmake-3.23.0/bin:/usr/local/openjpeg/bin:/usr/local/openmpi/bin:/home/gyin/anaconda3/bin:/home/gyin/anaconda3/condabin:/usr/local/netcdf4/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
  LD_LIBRARY_PATH: /usr/local/geotiff/lib:/usr/local/eccodes/lib:/usr/local/openjpeg/lib:/usr/local/openmpi/lib:/usr/local/netcdf4/lib:

---

• Compilers, Linkers, Flags, and Libraries *
  Location of the preprocessor: /usr/bin/gcc
  Location of the Fortran compiler: /usr/bin/gfortran
  Location of the Fortran linker: /usr/bin/gfortran
  Location of the C++ compiler: /usr/bin/g++
  Location of the C++ linker: /usr/bin/g++

Fortran compiler flags:
ESMF_F90COMPILER: gfortran
ESMF_F90COMPILEOPTS: -O -fPIC -m64 -mcmodel=small -pthread -ffree-line-length-none -fopenmp
ESMF_F90COMPILEPATHS: -I/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/mod/modO/Linux.gfortran.64.openmpi.default -I/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/src/include
ESMF_F90COMPILECPPFLAGS: -DESMF_NO_INTEGER_1_BYTE -DESMF_NO_INTEGER_2_BYTE -DESMF_MOAB=1 -DESMF_LAPACK=1 -DESMF_NO_ACC_SOFTWARE_STACK=1 -DESMF_YAMLCPP=1 -DESMF_YAML=1 -DESMF_PIO=1 -DESMF_MPIIO -DESMF_NO_OPENACC -DESMF_BOPT_O -DESMF_TESTCOMPTUNNEL -DSx86_64_small=1 -DESMF_OS_Linux=1 -DESMF_COMM=openmpi -DESMF_DIR=/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1
ESMF_F90COMPILEFREECPP:
ESMF_F90COMPILEFREENOCPP: -ffree-form
ESMF_F90COMPILEFIXCPP: -cpp -ffixed-form
ESMF_F90COMPILEFIXNOCPP:

Fortran linker flags:
ESMF_F90LINKOPTS: -m64 -mcmodel=small -pthread -Wl,--no-as-needed -fopenmp
ESMF_F90LINKPATHS: -L/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/lib/libO/Linux.gfortran.64.openmpi.default -L/usr/lib/gcc/x86_64-linux-gnu/11/
ESMF_F90LINKRPATHS: -Wl,-rpath,/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/lib/libO/Linux.gfortran.64.openmpi.default -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11/
ESMF_F90LINKLIBS: -lrt -lstdc++ -ldl -llapack -lblas
ESMF_F90ESMFLINKLIBS: -lesmf -lrt -lstdc++ -ldl -llapack -lblas

C++ compiler flags:
ESMF_CXXCOMPILER: g++
ESMF_CXXCOMPILEOPTS: -std=c++11 -O -DNDEBUG -fPIC -DESMF_LOWERCASE_SINGLEUNDERSCORE -m64 -mcmodel=small -pthread -fopenmp
ESMF_CXXCOMPILEPATHS: -I/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/src/include -I/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/src/prologue/yaml-cpp/include
ESMF_CXXCOMPILECPPFLAGS: -DESMF_NO_INTEGER_1_BYTE -DESMF_NO_INTEGER_2_BYTE -DESMF_MOAB=1 -DESMF_LAPACK=1 -DESMF_NO_ACC_SOFTWARE_STACK=1 -DESMF_YAMLCPP=1 -DESMF_YAML=1 -DESMF_PIO=1 -DESMF_MPIIO -DESMF_NO_OPENACC -DESMF_BOPT_O -DESMF_TESTCOMPTUNNEL -DSx86_64_small=1 -DESMF_OS_Linux=1 -DESMF_COMM=openmpi -DESMF_DIR=/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1 -D__SDIR__='' -DESMF_CXXSTD=11 -DESMF_NO_SIGUSR2

C++ linker flags:
ESMF_CXXLINKOPTS: -m64 -mcmodel=small -pthread -Wl,--no-as-needed -fopenmp
ESMF_CXXLINKPATHS: -L/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/lib/libO/Linux.gfortran.64.openmpi.default -L/usr/lib/gcc/x86_64-linux-gnu/11/
ESMF_CXXLINKRPATHS: -Wl,-rpath,/home/gyin/Documents/LIS/dependencies/esmf/esmf-ESMF_8_1_1/lib/libO/Linux.gfortran.64.openmpi.default -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11/
ESMF_CXXLINKLIBS: -lmpi_mpifh -lrt -lgfortran -ldl -llapack -lblas
ESMF_CXXESMFLINKLIBS: -lesmf -lmpi_mpifh -lrt -lgfortran -ldl -llapack -lblas

Shared library build:
ESMF_SL_LIBS_TO_MAKE: libesmf
ESMF_SL_SUFFIX: so
ESMF_SL_LIBLINKER: g++
ESMF_SL_LIBOPTS: -shared -fopenmp
ESMF_SL_LIBLIBS: