Need help installing LIS using Anaconda

[SasTalukdar]

Hi,

Has anyone tried installing LIS using the Anaconda environment?

I have installed all the required libraries in a new anaconda environment. Then set environmental variables as follows:
export FC=mpifort
export F77=mpifort
export CC=mpicc
export CXX=mpicxx
export LD=mpifort
export LIS_ARCH=linux_gnu
export LIS_FC=mpifort
export LIS_CC=mpicc
export PATH=/work/09534/st37357/ls6/anaconda/envs/lis-env/mod:$PATH
export PATH=/work/09534/st37357/ls6/anaconda/envs/lis-env/lib:$PATH
export PATH=/work/09534/st37357/ls6/anaconda/envs/lis-env/lib:$PATH
export PATH=/work/09534/st37357/ls6/anaconda/envs/lis-env/include:$PATH
export LIS_FC=/work/09534/st37357/ls6/anaconda/envs/lis-env/bin/mpifort
export LIS_CC=/work/09534/st37357/ls6/anaconda/envs/lis-env/bin/mpicc
export LIS_MODESMF=/work/09534/st37357/ls6/anaconda/envs/lis-env/mod
export LIS_LIBESMF=/work/09534/st37357/ls6/anaconda/envs/lis-env/lib
export LIS_OPENJPEG=/work/09534/st37357/ls6/anaconda/envs/lis-env
export LIS_ECCODES=/work/09534/st37357/ls6/anaconda/envs/lis-env
export LIS_NETCDF=/work/09534/st37357/ls6/anaconda/envs/lis-env
export LIS_HDF4=/work/09534/st37357/ls6/anaconda/envs/lis-env
export LIS_HDF5=/work/09534/st37357/ls6/anaconda/envs/lis-env
export LIS_HDFEOS=/work/09534/st37357/ls6/anaconda/envs/lis-env
export LD_LIBRARY_PATH=$LIS_HDF5/lib:$LIS_LIBESMF:$LIS_NETCDF/lib:${LIS_ECCODES}/lib:$LD_LIBRARY_PATH

But when I run this, I get the error:
/work/09534/st37357/ls6/anaconda/envs/is-env/bin/mpicc -DLIS_JULES -I./ -I../core/ -I../params/gfrac/SPORTDaily/ -I.params/gfrac/VIIRSDaily/ -I../surfacemodels/land/vic.4.1.1/ -I../surfacemodels/land/vic.4.1.1/physics/-I../surfacemodels/land/vic.4.1.2.l/ -I../surfacemodels/land/vic.4.1.2.l/physics/ -I../surfacemodels/land/awral.6.0.0/physics/ ../surfacemodels/land/vic.4.1.2.l/physics/calc_surf_energy_bal.c

/work/09534/st37357/ls6/anaconda/envs/lis-env/bin/ld: /work/09534/st37357/ls6/anaconda/envs/lis-env/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib/Scrt1.o: in function _start': (.text+0x24): undefined reference to main'

Please check the attached compile.log1

Then I tried adding -c to CFLAGS and FFLAGS to the configure file (please check configure.lis2). Here the previous error did not occur, but I got another error (Please check compile.log2):
/work/09534/st37357/ls6/anaconda/envs/lis-env/bin/mpifort -c -I/work/09534/st37357/ls6/anaconda/envs/lis-env/include/ -I/work/09534/st37357/ls6/anaconda/envs/lis-env/include/ -I/work/09534/st37357/ls6/anaconda/envs/lis-env/include/ -I/work/09534/st37357/ls6/anaconda/envs/lis-env/include/ -I/work/09534/st37357/ls6/anaconda/envs/lis-env/include/ -DLIS_JULES -I./ -I../core/ -I../params/gfrac/SPORTDaily/ -I../params/gfrac/VIIRSDaily/ -I../surfacemodels/land/vic.4.1.1/ -I../surfacemodels/land/vic.4.1.1/physics/ -I../surfacemodels/land/vic.4.1.2.l/ -I../surfacemodels/land/vic.4.1.2.l/physics/ -I../surfacemodels/land/awral.6.0.0/physics/ ../surfacemodels/land/noahmp.4.0.1/da_tws/noahmp401_scale_tws.F90
../surfacemodels/land/vic.4.1.2.l/physics/get_global_param.c: In function 'get_global_param':
../surfacemodels/land/vic.4.1.2.l/physics/get_global_param.c:961:47: error: passing argument 3 of 'display_current_settings' from incompatible pointer type [-Wincompatible-pointer-types]
961 | display_current_settings(DISP_VERSION,names,&global);
| ^~~~~~~
| |
| global_param_struct **
In file included from ../surfacemodels/land/vic.4.1.2.l/physics/get_global_param.c:3:

Does anyone know how to solve this?
compile.log1.txt
compile.log2.txt
configure.lis2.txt
configure.lis1.txt

Thank you,
Sasanka
@dmocko @sujayvkumar

[dmocko]

Hi @SasTalukdar

Do you need to run the VIC LSM? If you don't, then can you try to compile LIS without it?

Create a LISF/lis/make/user.cfg file containing:

VIC.4.1.1: Off
VIC.4.1.2: Off

Then in the LISF/lis/make directory, run:
gmake realclean

Then configure and compile as usual.