TRANSCRIPT_ASSEMBLY subworkflow, error message unrelated to the error

[LucileSol]

nextlfow.log

Jan-26 15:21:17.959 [TaskFinalizer-4] ERROR nextflow.processor.TaskProcessor - Error executing process > 'TRANSCRIPT_ASSEMBLY:HISAT2_ALIGN (SRR22404873)'

Caused by:
  Missing output file(s) `*.log` expected by process `TRANSCRIPT_ASSEMBLY:HISAT2_ALIGN (SRR22404873)`


Command executed:

  INDEX=$( find -L ./ -name "*.1.ht2" | sed 's/.1.ht2//' )
  hisat2 \
      -x $INDEX \
      -1 SRR22404873_1.fastp.fastq.gz \
      -2 SRR22404873_2.fastp.fastq.gz \
      --summary-file SRR22404873.hisat2.summary.log \
      --threads 12 \
      --new-summary --novel-splicesite-outfile SRR22404873_splicesite.txt \
      | samtools sort --threads 12 -o SRR22404873.bam -
  
  cat <<-END_VERSIONS > versions.yml
  "TRANSCRIPT_ASSEMBLY:HISAT2_ALIGN":
      hisat2: 2.2.0
      samtools: $( samtools --version | sed '1!d; s/samtools //' )
  END_VERSIONS

Command exit status:
  0

Command output:
  (empty)

Command error:
  (ERR): mkfifo(/tmp/20.inpipe1) failed.
  Exiting now ...

caused by param.yml:

subworkflow: 'transcript_assembly'
reads: '*SRR22404873_{1,2}.fastq.gz'
genome: 'genome.fa'
single_end: false
outdir: 'results_SRR22404873'

fixed by :

subworkflow: 'transcript_assembly'
reads: 'SRR22404873_{1,2}.fastq.gz'
genome: 'genome.fa'
single_end: false
outdir: 'results_SRR22404873'

So not really informative error message