TranscriptAssembly pipeline can be improve

[Juke34]

Should be more generalized.
With choice for read aligner:

• star
• Hisat2

choice of different assemblers (Why? Because better result: ):

• denovo:
  • soap denovo trans
  • Oases
  • trinity
• guided
  • Stringtie
  • Scallop
  • Bayerassembler

And an optional filtering step at the end:
Mikado
EviGene

[LucileSol]

we could also add normalization (as an option if data too big).
do we do denovo or reference guided with trinity? (we could do both)
need QC (transcript QC : detonate, transrate, more?)
need filtering maybe

use scilifelab (nf-core) RNAseq pipeline? to check