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The goal is to have a program that we can point at a Babel run that runs some basic tests on the generated files, including:
- Testing whether all the expected compendia, synonym and report files exist and are larger than some minimum size
- Check if the same identifier shows up in multiple files
- Check that each file (except
umls.txt) only contains a single Biolink type - Check CURIEs (e.g. make sure we don't have
CHEBI:CHEBI:41423as per RemoveCHEBI:CHEBI:41423from PUBCHEM.COMPOUND:2662 results #69) - Add a test for CHEBI.CHEBI just to make sure it's fixed TranslatorSRI/babel-validation#16
- Does every clique have a label?
- Is every UMLS ID in a clique somewhere?
We're also tracking this in the Babel repository at #36
Copied over from TranslatorSRI/babel-validation#14
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