WCOSS2 first commit

Author: CarlosMDiaz-NCO

.gitignore

@@ -0,0 +1,66 @@
+### C++ / Fortran
+# Prerequisites
+*.d
+
+# Compiled Object files
+*.slo
+*.lo
+*.o
+*.obj
+
+# Precompiled Headers
+*.gch
+*.pch
+
+# Compiled Dynamic libraries
+*.so
+*.dylib
+*.dll
+
+# Fortran module files
+*.mod
+*.smod
+
+# Compiled Static libraries
+*.lai
+*.la
+*.a
+*.lib
+
+# Executables
+*.exe
+*.out
+*.app
+
+### C 
+# Object files
+*.ko
+*.elf
+
+# Linker output
+*.ilk
+*.map
+*.exp
+
+# Shared objects (inc. Windows DLLs)
+*.so.*
+
+# Executables
+*.i*86
+*.x86_64
+*.hex
+
+# Debug files
+*.dSYM/
+*.su
+*.idb
+*.pdb
+
+# Kernel Module Compile Results
+*.mod*
+*.cmd
+.tmp_versions/
+modules.order
+Module.symvers
+Mkfile.old
+dkms.conf

dev/dbnet/bin/dbn_alert

@@ -0,0 +1,13 @@
+#!/bin/bash
+
+####################################
+# mimic'ing what dbn_alert might do.
+####################################
+DATE="/bin/date +%Y-%m-%dT%H:%M:%S"
+
+src=$(cd $(dirname $0) && pwd)
+root=${src}/../..
+
+export MDLTEST_DIR=${MDLTEST_DIR:-${root}}
+
+echo -e "dbn_alert: `${DATE}`\n    $1 $2 $3\n    $4 $5 $6" >> ${MDLTEST_DIR}/DBN_Messages.txt 

dev/myEcf/jpetss.ecf

@@ -0,0 +1,30 @@
+#!/bin/bash
+
+# Source model version file
+
+. ${HOMEpetss:?}/versions/run.ver
+
+######################################################################
+# The ECF options
+######################################################################
+
+qsub << EOF 
+  #PBS -N PETSS_${pid}
+  #PBS -j oe
+  #PBS -l walltime=1:50:00
+  #PBS -q ${QUEUE:?}
+  #PBS -A ETSS-DEV
+  #PBS -l place=vscatter,select=5:ncpus=128:mem=50GB+1:ncpus=88:mem=50GB
+  #PBS -l debug=true
+  #PBS -V
+  #PBS -W umask=022
+  #PBS -W depend=afterok:${petss_prewnd_id}
+
+  module load PrgEnv-intel/${PrgEnv_intel_ver}
+  module load intel/${intel_ver}
+  module load craype/${craype_ver}
+  module load cray-pals/${cray_pals_ver}
+  module load prod_util/${prod_util_ver}
+  module load cfp/${cfp_ver}
+  ${HOMEpetss}/jobs/JPETSS
+EOF

dev/myEcf/jpetss_combdat.sh.ecf

@@ -0,0 +1,25 @@
+#!/bin/bash
+
+. ${HOMEpetss:?}/versions/run.ver
+
+qsub << EOF 
+  #PBS -N PETSS_COMBDAT.${pid}
+  #PBS -j oe
+  #PBS -l walltime=1:05:00
+  #PBS -q ${QUEUE:?}
+  #PBS -A ETSS-DEV
+  #PBS -l select=1:ncpus=2:mem=500MB
+  #PBS -l debug=true
+  #PBS -V
+  #PBS -W umask=022
+  #PBS -W depend=afterok:${petss_griddat_id}
+
+  module load PrgEnv-intel/${PrgEnv_intel_ver}
+  module load intel/${intel_ver}
+  module load craype/${craype_ver}
+  module load cray-pals/${cray_pals_ver}
+  module load prod_util/${prod_util_ver}
+  module load cfp/${cfp_ver}
+
+  ${HOMEpetss}/jobs/JPETSS_COMBDAT
+EOF

dev/myEcf/jpetss_drawimages.ecf

@@ -0,0 +1,57 @@
+#!/bin/bash
+
+# Source model version file
+
+. ${HOMEpetss:?}/versions/run.ver
+
+######################################################################
+# The ECF options
+######################################################################
+if [[ ${jump} == "N" ]] ; then
+qsub << EOF 
+  #PBS -N PETSS_DRAWIMAGES.${pid}
+  #PBS -j oe
+  #PBS -l walltime=1:30:00
+  #PBS -q ${QUEUE:?}
+  #PBS -A ETSS-DEV
+  #PBS -l place=vscatter,select=2:ncpus=128:mem=100GB+1:ncpus=38:mem=100GB
+  #PBS -l debug=true
+  #PBS -V
+  #PBS -W umask=022
+  #PBS -W depend=afterok:${petss_merg_id}
+
+  module load PrgEnv-intel/${PrgEnv_intel_ver}
+  module load intel/${intel_ver}
+  module load craype/${craype_ver}
+  module load cray-pals/${cray_pals_ver}
+  module load prod_util/${prod_util_ver}
+  module load cfp/${cfp_ver}
+  module load grib_util/${grib_util_ver}
+  module load imagemagick/${imagemagick_ver}
+
+  ${HOMEpetss}/jobs/JPETSS_DRAWIMAGES
+EOF
+else
+qsub << EOF 
+  #PBS -N PETSS_DRAWIMAGES.${pid}
+  #PBS -j oe
+  #PBS -l walltime=1:30:00
+  #PBS -q ${QUEUE:?}
+  #PBS -A ETSS-DEV
+  #PBS -l place=vscatter,select=2:ncpus=128:mem=100GB+1:ncpus=38:mem=100GB
+  #PBS -l debug=true
+  #PBS -V
+  #PBS -W umask=022
+
+  module load PrgEnv-intel/${PrgEnv_intel_ver}
+  module load intel/${intel_ver}
+  module load craype/${craype_ver}
+  module load cray-pals/${cray_pals_ver}
+  module load prod_util/${prod_util_ver}
+  module load cfp/${cfp_ver}
+  module load grib_util/${grib_util_ver}
+  module load imagemagick/${imagemagick_ver}
+
+  ${HOMEpetss}/jobs/JPETSS_DRAWIMAGES
+EOF
+fi

dev/myEcf/jpetss_griddat.sh.ecf

@@ -0,0 +1,27 @@
+#!/bin/bash
+
+. ${HOMEpetss:?}/versions/run.ver
+
+qsub << EOF 
+  #PBS -N PETSS_GRIDDAT.${pid}
+  #PBS -j oe
+  #PBS -l walltime=1:05:00
+  #PBS -q ${QUEUE:?}
+  #PBS -A ETSS-DEV
+  #PBS -l place=vscatter,select=1:ncpus=4:mem=500MB
+  #PBS -l debug=true
+  #PBS -V
+  #PBS -W umask=022
+  #PBS -W depend=afterok:${petss_parsedat_id}
+
+
+  module load PrgEnv-intel/${PrgEnv_intel_ver}
+  module load intel/${intel_ver}
+  module load craype/${craype_ver}
+  module load cray-pals/${cray_pals_ver}
+  module load prod_util/${prod_util_ver}
+  module load cfp/${cfp_ver}
+
+  ${HOMEpetss}/jobs/JPETSS_GRIDDAT
+
+EOF

dev/myEcf/jpetss_merg.ecf

@@ -0,0 +1,32 @@
+#!/bin/bash
+
+# Source model version file
+
+. ${HOMEpetss:?}/versions/run.ver
+
+######################################################################
+# The ECF options
+######################################################################
+
+qsub << EOF 
+  #PBS -N PETSS_MERG_${pid}
+  #PBS -j oe
+  #PBS -l walltime=1:20:00
+  #PBS -q ${QUEUE:?}
+  #PBS -A ETSS-DEV
+  #PBS -l place=vscatter,select=2:ncpus=128:mem=450GB+1:ncpus=12:mem=450GB
+  #PBS -l debug=true
+  #PBS -V
+  #PBS -W umask=022
+  #PBS -W depend=afterok:${petss_postprob_id}
+
+  module load PrgEnv-intel/${PrgEnv_intel_ver}
+  module load intel/${intel_ver}
+  module load craype/${craype_ver}
+  module load cray-pals/${cray_pals_ver}
+  module load prod_util/${prod_util_ver}
+  module load cfp/${cfp_ver}
+  module load grib_util/${grib_util_ver}
+  module load libjpeg/${libjpeg_ver}
+  ${HOMEpetss}/jobs/JPETSS_MERG
+EOF

dev/myEcf/jpetss_parsedat.sh.ecf

@@ -0,0 +1,46 @@
+#!/bin/bash
+
+. ${HOMEpetss:?}/versions/run.ver
+
+if [[ ${jump} == "N" ]] ; then
+qsub << EOF 
+  #PBS -N PETSS_PARSEDAT.${pid}
+  #PBS -j oe
+  #PBS -l walltime=1:10:00
+  #PBS -q ${QUEUE:?}
+  #PBS -A ETSS-DEV
+  #PBS -l place=vscatter,select=1:ncpus=12:mem=700MB
+  #PBS -l debug=true
+  #PBS -V
+  #PBS -W umask=022
+  #PBS -W depend=afterok:${petss_merg_id}
+
+  module load PrgEnv-intel/${PrgEnv_intel_ver}
+  module load intel/${intel_ver}
+  module load craype/${craype_ver}
+  module load cray-pals/${cray_pals_ver}
+  module load prod_util/${prod_util_ver}
+  module load cfp/${cfp_ver}
+  ${HOMEpetss}/jobs/JPETSS_PARSEDAT
+EOF
+else
+qsub << EOF 
+  #PBS -N PETSS_PARSEDAT.${pid}
+  #PBS -j oe
+  #PBS -l walltime=1:10:00
+  #PBS -q ${QUEUE:?}
+  #PBS -A ETSS-DEV
+  #PBS -l place=vscatter,select=1:ncpus=12:mem=700MB
+  #PBS -l debug=true
+  #PBS -V
+  #PBS -W umask=022
+
+  module load PrgEnv-intel/${PrgEnv_intel_ver}
+  module load intel/${intel_ver}
+  module load craype/${craype_ver}
+  module load cray-pals/${cray_pals_ver}
+  module load prod_util/${prod_util_ver}
+  module load cfp/${cfp_ver}
+  ${HOMEpetss}/jobs/JPETSS_PARSEDAT
+EOF
+fi

dev/myEcf/jpetss_postprob.ecf

@@ -0,0 +1,30 @@
+#!/bin/bash
+
+# Source model version file
+
+. ${HOMEpetss:?}/versions/run.ver
+
+######################################################################
+# The ECF options
+######################################################################
+
+qsub << EOF 
+  #PBS -N PETSS_POSTPROB_${pid}
+  #PBS -j oe
+  #PBS -l walltime=1:10:00
+  #PBS -q ${QUEUE:?}
+  #PBS -A ETSS-DEV
+  #PBS -l place=vscatter,select=2:ncpus=128:mem=20GB+1:ncpus=18:mem=20GB
+  #PBS -l debug=true
+  #PBS -V
+  #PBS -W umask=022
+  #PBS -W depend=afterok:${petss_id}
+
+  module load PrgEnv-intel/${PrgEnv_intel_ver}
+  module load intel/${intel_ver}
+  module load craype/${craype_ver}
+  module load cray-pals/${cray_pals_ver}
+  module load prod_util/${prod_util_ver}
+  module load cfp/${cfp_ver}
+  ${HOMEpetss}/jobs/JPETSS_POSTPROB
+EOF

dev/myEcf/jpetss_prewnd.ecf

@@ -0,0 +1,30 @@
+#!/bin/bash
+
+# Source model version file
+
+. ${HOMEpetss:?}/versions/run.ver
+
+######################################################################
+# The ECF options
+######################################################################
+
+qsub << EOF 
+  #PBS -N PETSS_PREWND_${pid}
+  #PBS -j oe
+  #PBS -l walltime=1:15:00
+  #PBS -q ${QUEUE:?}
+  #PBS -A ETSS-DEV
+  #PBS -l place=vscatter,select=1:ncpus=104:mem=5GB
+  #PBS -l debug=true
+  #PBS -V
+  #PBS -W umask=022
+
+  module load PrgEnv-intel/${PrgEnv_intel_ver}
+  module load intel/${intel_ver}
+  module load craype/${craype_ver}
+  module load cray-pals/${cray_pals_ver}
+  module load prod_util/${prod_util_ver}
+  module load cfp/${cfp_ver}
+  module load grib_util/${grib_util_ver}
+  ${HOMEpetss}/jobs/JPETSS_PREWND
+EOF