synching HPC with GH

Author: lillylaplace

data-monitoring/central-tracker_test-donotuse-mini-dataset.csv

@@ -1,7 +1,7 @@
 variable,dataType,encrypted,description,detail,allowedSuffix,measureUnit,allowedValues,valueInfo,provenance,expectedFileExt
 id,id,0,Participant ID,"The participant ID is specific to this study, and is auto-assigned by REDCap.",NA,Integer,"[3000000,3009999],[3080000,3089999],[3090000,3099999]",One ID per participant (eligible and ineligible),"file: ""thriveconsent""; variable: ""record_id""",NA
-consent,consent,0,Participant consent status,"When data is transferred from raw to checked, value of 1 is assigned based on the value of ""consent_complete"" or ""consentes_complete"" == ""2""(indicating participant consented), otherwise 0.",NA,Logical,"NA, 0, 1","NA, status unknown | 0, no data exists | 1, data exists","file: ""thriveconsent""; variable: """"",NA
-assent,assent,0,Participant assent status,"When data is transferred from raw to checked, value of 1 is assigned based on the value of ""assent_complete""==""2"" (indicating participant assented), otherwise 0.",NA,Logical,"NA, 0, 1","NA, status unknown | 0, no data exists | 1, data exists","file: ""thriveconsent""; variable: """"",NA
+consent,consent,0,Participant consent status,"When data is transferred from raw to checked, value of 1 is assigned based on the value of ""consent_complete"" or ""consentes_complete"" == ""2""(indicating participant consented), otherwise 0.",NA,Logical,"NA, 0, 1","NA, status unknown | 0, no data exists | 1, data exists","file: ""thriveconsent""; variable: ""consent_v2""",NA
+assent,assent,0,Participant assent status,"When data is transferred from raw to checked, value of 1 is assigned based on the value of ""assent_complete""==""2"" (indicating participant assented), otherwise 0.",NA,Logical,"NA, 0, 1","NA, status unknown | 0, no data exists | 1, data exists","file: ""thriveconsent""; variable: ""assent_v2""",NA
 arrow-alert-v1-1_psychopy,psychopy,0,arrow-alert-v1-1_psychopy task status,"When data is transferred from raw to checked, value of 1 is assigned if ""arrow-alert-v1-1"" file exists, otherwise 0.","s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, 0, 1","NA, status unknown | 0, no data exists | 1, data exists",direct-psychopy,".psydat, .csv, .log"
 arrow-alert-v1-2_psychopy,psychopy,0,arrow-alert-v1-2_psychopy task status,"When data is transferred from raw to checked, value of 1 is assigned if ""arrow-alert-v1-2"" file exists, otherwise 0.","s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, 0, 1","NA, status unknown | 0, no data exists | 1, data exists",direct-psychopy,".psydat, .csv, .log"
 arrow-alert_psychopy,combination,0,arrow-alert_psychopy task status,"When updatetracker is run, value of 1 is assigned if either of the variables specificed for a given allowedSuffix = 1, otherwise a value of 0 is assigned.","s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, 0, 1","NA, status unknown | 0, no data exists | 1, data exists","variables: ""arrow-alert-v1-1_psychopy"",""arrow-alert-v1-2_psychopy""",NA
@@ -239,6 +239,6 @@ pidentityiqs,parent_identity,0,"Parent identity status, IQS","When data is trans
 pidentitybbs,parent_identity,0,"Parent identity status, BBS","When data is transferred from raw to checked, value of 8 is assigned based on the value of parent ID = 308XXXX; value of 9 is assigned based on the value of parent ID = 309XXXX","s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, 8, 9","NA, status unknown | 8, primary parent | 9, secondary parent","file: ""bbsparent""; variable: ""record_id""",NA
 plangiqs,parent_lang,0,"Parent language status, IQS","When data is transferred from raw to checked, value of 1 is assigned based on the value of iqspaid_lang_s1_r1_e1 = 1 (English); value of 2 is assigned based on the value of  iqspaid_lang_s1_r1_e1 = 2 (Spanish)","s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, 1, 2","NA, status unknown | 1, English | 2, Spanish","file: ""iqsparent""; variable: ""iqspaid_lang""",NA
 plangbbs,parent_lang,0,"Parent language status, BBS","When data is transferred from raw to checked, value of 1 is assigned based on the value of bbspaid_lang_s1_r1_e1 = 1 (English); value of 2 is assigned based on the value of  bbspaid_lang_s1_r1_e1 = 2 (Spanish)","s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, 1, 2","NA, status unknown | 1, English | 2, Spanish","file: ""bbsparent""; variable: ""bbspaid_lang""",NA
-all_eeg_preprocessing_finished,eeg_preprocessing_status,0,Status of EEG preprocessing,,"s1_r1_e1, s2_r1_e1, s3_r1_e2",Logical,"NA, 0, 1","NA, status unknown (EEG data doesn't exist) | 0, Preprocessing not finished | 1, Preprocessing finished",code-MADE-pipeline,NA
-any_usable_data,eeg_preprocessing_status,0,Status of EEG data after preprocessing,,"s1_r1_e1, s2_r1_e1, s3_r1_e3",Logical,"NA, 0, 1","NA, status unknown (EEG data doesn't exist) | 0, Useable data does not exist| 1, Useable data exists",code-MADE-pipeline,NA
-total_epochs_after_artifact_rejection,eeg_preprocessing_status,0,Number of epochs remaining after artifact rejection,,"s1_r1_e1, s2_r1_e1, s3_r1_e4",Logical,"NA, [0,3000]","NA, status unknown (EEG data doesn't exist) | [0,3000] Number of epochs remaining after artifact rejection",code-MADE-pipeline,NA
+all_eeg_preprocessing_finished,eeg_preprocessing_status,0,Status of EEG preprocessing,,"s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, 0, 1","NA, status unknown (EEG data doesn't exist) | 0, Preprocessing not finished | 1, Preprocessing finished",code-MADE-pipeline,NA
+any_usable_data,eeg_preprocessing_status,0,Status of EEG data after preprocessing,,"s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, 0, 1","NA, status unknown (EEG data doesn't exist) | 0, Useable data does not exist| 1, Useable data exists",code-MADE-pipeline,NA
+total_epochs_after_artifact_rejection,eeg_preprocessing_status,0,Number of epochs remaining after artifact rejection,,"s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, [0,3000]","NA, status unknown (EEG data doesn't exist) | [0,3000] Number of epochs remaining after artifact rejection",code-MADE-pipeline,NA

data-monitoring/central-tracker_test-donotuse-mini.csv

@@ -1,7 +1,7 @@
 variable,dataType,encrypted,description,detail,allowedSuffix,measureUnit,allowedValues,valueInfo,provenance,expectedFileExt
 id,id,0,Participant ID,"The participant ID is specific to this study, and is auto-assigned by REDCap.",NA,Integer,"[3000000,3009999],[3080000,3089999],[3090000,3099999]",One ID per participant (eligible and ineligible),"file: ""thriveconsent""; variable: ""record_id""",NA
-consent,consent,0,Participant consent status,"When data is transferred from raw to checked, value of 1 is assigned based on the value of ""consent_complete"" or ""consentes_complete"" == ""2""(indicating participant consented), otherwise 0.",NA,Logical,"NA, 0, 1","NA, status unknown | 0, no data exists | 1, data exists","file: ""thriveconsent""; variable: """"",NA
-assent,assent,0,Participant assent status,"When data is transferred from raw to checked, value of 1 is assigned based on the value of ""assent_complete""==""2"" (indicating participant assented), otherwise 0.",NA,Logical,"NA, 0, 1","NA, status unknown | 0, no data exists | 1, data exists","file: ""thriveconsent""; variable: """"",NA
+consent,consent,0,Participant consent status,"When data is transferred from raw to checked, value of 1 is assigned based on the value of ""consent_complete"" or ""consentes_complete"" == ""2""(indicating participant consented), otherwise 0.",NA,Logical,"NA, 0, 1","NA, status unknown | 0, no data exists | 1, data exists","file: ""thriveconsent""; variable: ""consent_v2""",NA
+assent,assent,0,Participant assent status,"When data is transferred from raw to checked, value of 1 is assigned based on the value of ""assent_complete""==""2"" (indicating participant assented), otherwise 0.",NA,Logical,"NA, 0, 1","NA, status unknown | 0, no data exists | 1, data exists","file: ""thriveconsent""; variable: ""assent_v2""",NA
 arrow-alert-v1-1_psychopy,psychopy,0,arrow-alert-v1-1_psychopy task status,"When data is transferred from raw to checked, value of 1 is assigned if ""arrow-alert-v1-1"" file exists, otherwise 0.","s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, 0, 1","NA, status unknown | 0, no data exists | 1, data exists",direct-psychopy,".psydat, .csv, .log"
 arrow-alert-v1-2_psychopy,psychopy,0,arrow-alert-v1-2_psychopy task status,"When data is transferred from raw to checked, value of 1 is assigned if ""arrow-alert-v1-2"" file exists, otherwise 0.","s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, 0, 1","NA, status unknown | 0, no data exists | 1, data exists",direct-psychopy,".psydat, .csv, .log"
 arrow-alert_psychopy,combination,0,arrow-alert_psychopy task status,"When updatetracker is run, value of 1 is assigned if either of the variables specificed for a given allowedSuffix = 1, otherwise a value of 0 is assigned.","s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, 0, 1","NA, status unknown | 0, no data exists | 1, data exists","variables: ""arrow-alert-v1-1_psychopy"",""arrow-alert-v1-2_psychopy""",NA
@@ -239,6 +239,6 @@ pidentityiqs,parent_identity,0,"Parent identity status, IQS","When data is trans
 pidentitybbs,parent_identity,0,"Parent identity status, BBS","When data is transferred from raw to checked, value of 8 is assigned based on the value of parent ID = 308XXXX; value of 9 is assigned based on the value of parent ID = 309XXXX","s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, 8, 9","NA, status unknown | 8, primary parent | 9, secondary parent","file: ""bbsparent""; variable: ""record_id""",NA
 plangiqs,parent_lang,0,"Parent language status, IQS","When data is transferred from raw to checked, value of 1 is assigned based on the value of iqspaid_lang_s1_r1_e1 = 1 (English); value of 2 is assigned based on the value of  iqspaid_lang_s1_r1_e1 = 2 (Spanish)","s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, 1, 2","NA, status unknown | 1, English | 2, Spanish","file: ""iqsparent""; variable: ""iqspaid_lang""",NA
 plangbbs,parent_lang,0,"Parent language status, BBS","When data is transferred from raw to checked, value of 1 is assigned based on the value of bbspaid_lang_s1_r1_e1 = 1 (English); value of 2 is assigned based on the value of  bbspaid_lang_s1_r1_e1 = 2 (Spanish)","s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, 1, 2","NA, status unknown | 1, English | 2, Spanish","file: ""bbsparent""; variable: ""bbspaid_lang""",NA
-all_eeg_preprocessing_finished,eeg_preprocessing_status,0,Status of EEG preprocessing,,"s1_r1_e1, s2_r1_e1, s3_r1_e2",Logical,"NA, 0, 1","NA, status unknown (EEG data doesn't exist) | 0, Preprocessing not finished | 1, Preprocessing finished",code-MADE-pipeline,NA
-any_usable_data,eeg_preprocessing_status,0,Status of EEG data after preprocessing,,"s1_r1_e1, s2_r1_e1, s3_r1_e3",Logical,"NA, 0, 1","NA, status unknown (EEG data doesn't exist) | 0, Useable data does not exist| 1, Useable data exists",code-MADE-pipeline,NA
-total_epochs_after_artifact_rejection,eeg_preprocessing_status,0,Number of epochs remaining after artifact rejection,,"s1_r1_e1, s2_r1_e1, s3_r1_e4",Logical,"NA, [0,3000]","NA, status unknown (EEG data doesn't exist) | [0,3000] Number of epochs remaining after artifact rejection",code-MADE-pipeline,NA
+all_eeg_preprocessing_finished,eeg_preprocessing_status,0,Status of EEG preprocessing,,"s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, 0, 1","NA, status unknown (EEG data doesn't exist) | 0, Preprocessing not finished | 1, Preprocessing finished",code-MADE-pipeline,NA
+any_usable_data,eeg_preprocessing_status,0,Status of EEG data after preprocessing,,"s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, 0, 1","NA, status unknown (EEG data doesn't exist) | 0, Useable data does not exist| 1, Useable data exists",code-MADE-pipeline,NA
+total_epochs_after_artifact_rejection,eeg_preprocessing_status,0,Number of epochs remaining after artifact rejection,,"s1_r1_e1, s2_r1_e1, s3_r1_e1",Logical,"NA, [0,3000]","NA, status unknown (EEG data doesn't exist) | [0,3000] Number of epochs remaining after artifact rejection",code-MADE-pipeline,NA