add r cmd check github action

Author: atyrell3

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,51 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+
+name: R-CMD-check.yaml
+
+permissions: read-all
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macos-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

README.Rmd

@@ -17,13 +17,13 @@ files <- list.files(recursive = TRUE, all.files = TRUE) %>%
   stringr::str_subset(pattern = ".Renviron", negate = TRUE)
 total_size <- (sum(file.size(files))/1073741824) %>%
   stringr::str_trunc(width = 4, ellipsis = "")
-
 cat(badger::badge_devel("NEFSC/READ-EDAB-NEesp2", "blue"),
     badger::badge_last_commit("NEFSC/READ-EDAB-NEesp2"),
     badger::badge_custom("repo size", paste(total_size, "GB"), color = "blue", url = "https://github.com/NEFSC/READ-EDAB-NEesp2"),
     sep = "\n")
 ```
 [![](https://github.com/NEFSC/READ-EDAB-NEesp2/workflows/gitleaks/badge.svg)](https://github.com/NEFSC/READ-EDAB-NEesp2/actions/workflows/secretScan.yml)
+[![R-CMD-check](https://github.com/NEFSC/READ-EDAB-NEesp2/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/NEFSC/READ-EDAB-NEesp2/actions/workflows/R-CMD-check.yaml)
 <!-- badges: end -->
 
 # Ecosystem and Socioeconomic Profiles 

README.md

@@ -3,8 +3,9 @@
 
 [![](https://img.shields.io/badge/devel%20version-0.1.1-blue.svg)](https://github.com/NEFSC/READ-EDAB-NEesp2)
 [![](https://img.shields.io/github/last-commit/NEFSC/READ-EDAB-NEesp2.svg)](https://github.com/NEFSC/READ-EDAB-NEesp2/commits/main)
-[![](https://img.shields.io/badge/repo%20size-1.25%20GB-blue.svg)](https://github.com/NEFSC/READ-EDAB-NEesp2)
+[![](https://img.shields.io/badge/repo%20size-0.60%20GB-blue.svg)](https://github.com/NEFSC/READ-EDAB-NEesp2)
 [![](https://github.com/NEFSC/READ-EDAB-NEesp2/workflows/gitleaks/badge.svg)](https://github.com/NEFSC/READ-EDAB-NEesp2/actions/workflows/secretScan.yml)
+[![R-CMD-check](https://github.com/NEFSC/READ-EDAB-NEesp2/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/NEFSC/READ-EDAB-NEesp2/actions/workflows/R-CMD-check.yaml)
 <!-- badges: end -->
 
 # Ecosystem and Socioeconomic Profiles
@@ -72,14 +73,14 @@ templates will be added shortly.
 <col style="width: 33%" />
 </colgroup>
 <thead>
-<tr class="header">
+<tr>
 <th><a href="https://github.com/atyrell3">atyrell3</a></th>
 <th><a href="https://github.com/stephanie-owen">stephanie-owen</a></th>
 <th></th>
 </tr>
 </thead>
 <tbody>
-<tr class="odd">
+<tr>
 <td><a href="https://github.com/atyrell3"><img
 src="https://avatars.githubusercontent.com/u/77738923?s=100&amp;u=92e54f60ca179f3e41c1a3610fb3ecdb9e233434&amp;v=4" /></a></td>
 <td><a href="https://github.com/stephanie-owen"><img