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Merge branch 'main' into add-materials-newsletter
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resources/nfdi4bioimage.yml

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- Publication
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url: https://arxiv.org/abs/2401.13022
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- authors:
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- Ruman Gerst
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- Zoltán Cseresnyés
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- Marc Thilo Figge
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name: 'JIPipe Spring Course (JSC) 2025: Workshop Recordings, Slides, Homework, and Materials'
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description: 'The course gives a basic introduction into microscopy, optics, and image analysis.
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This is followed by interactive tutorials that explain the basics of creating fully automated image analysis
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workflows in JIPipe using a simple blobs analysis and intermediate-level quantification of LSFM kidney images.
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JIPipe-specific features including annotation-guided batch processing, organization with graph compartments,
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expressions and path processing, and project-wide metadata and parameters are also established.
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Finally, an advanced real-world pipeline is showcased with detailed guidance through the individual
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components that include integrations of Cellpose and TrackMate.'
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url: 'https://doi.org/10.5281/zenodo.15373555'
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type:
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- Workshop
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- Video
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- Tutorial
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- Slides
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license: cc-by-4.0
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publication_date: '2025-05-12:T13:37:00+00:00'
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tags:
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- jipipe
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- bioimage analysis
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- authors:
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- Cameron Watson
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- Allison Creason

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