deploy: 9e649dc

Author: haesleinhuepf

_sources/authors/carsten_fortmann-grote.md

@@ -1,4 +1,23 @@
-# Carsten fortmann-grote (5)
+# Carsten fortmann-grote (8)
+## Howto organize your image data in OMERO
+
+Thomas Zobel, Carsten Fortmann-Grote
+
+Published 2025-10-21
+
+Licensed CC-BY-4.0
+
+
+
+Material for the OMERO Training Workshop at MPI Evolutionary Biology, Dec. 7 & 8 2023
+
+[https://zenodo.org/records/17404133](https://zenodo.org/records/17404133)
+
+[https://doi.org/10.5281/zenodo.17404133](https://doi.org/10.5281/zenodo.17404133)
+
+
+---
+
 ## I3D:bio's OMERO training material: Re-usable, adjustable, multi-purpose slides for local user training
 
 Christian Schmidt, Michele Bortolomeazzi, Tom Boissonnet, Carsten Fortmann-Grote, Julia Dohle, Peter Zentis, Niraj Kandpal, Susanne Kunis, Thomas Zobel, Stefanie Weidtkamp-Peters, Elisa Ferrando-May
@@ -41,6 +60,25 @@ Tags: Exclude From Dalia
 [https://doi.org/10.5281/zenodo.14792534](https://doi.org/10.5281/zenodo.14792534)
 
 
+---
+
+## Knowledge Graphs for NFDI4BIOIMAGE
+
+Carsten Fortmann-Grote
+
+Published 2025-10-16
+
+Licensed CC-BY-4.0
+
+
+
+Presentation in the FIZ-Karlsruhe "NFDICore Playground" Seminar on October 16 2025This work is funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under the National Research Data Infrastructure – NFDI 46/1 – 501864659
+
+[https://zenodo.org/records/17372593](https://zenodo.org/records/17372593)
+
+[https://doi.org/10.5281/zenodo.17372593](https://doi.org/10.5281/zenodo.17372593)
+
+
 ---
 
 ## Linked (Open) Data for Microbial Population Biology
@@ -102,3 +140,24 @@ Content type: Github Repository
 
 ---
 
+## openBIS for Evolutionary Biology
+
+Carsten Fortmann-Grote, Kristian Ullrich
+
+Published 2025-09-24
+
+Licensed CC-BY-4.0
+
+
+
+Presentation given at the openBIS User Group Meeting on September 22nd 2025
+ 
+This work is funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under the National Research Data Infrastructure – NFDI 46/1 – 501864659
+
+[https://zenodo.org/records/17191504](https://zenodo.org/records/17191504)
+
+[https://doi.org/10.5281/zenodo.17191504](https://doi.org/10.5281/zenodo.17191504)
+
+
+---
+

_sources/authors/cornelia_wetzker.md

@@ -1,4 +1,4 @@
-# Cornelia wetzker (7)
+# Cornelia wetzker (9)
 ## A Glimpse of the Open-Source FLIM Analysis Software Tools FLIMfit, FLUTE and napari-flim-phasor-plotter
 
 Anca Margineanu, Chiara Stringari, Marcelo Zoccoler, Cornelia Wetzker
@@ -134,6 +134,27 @@ Tags: Exclude From Dalia
 [https://doi.org/10.5281/zenodo.13684187](https://doi.org/10.5281/zenodo.13684187)
 
 
+---
+
+## The Power of Sharing: Open Data in Bio-image Analysis
+
+Frauke Beyer, Michaela Unger, Ronny Gey, Riccardo Massei, Cornelia Wetzker, Elena Nicolay, Lampert, Mara Harriet
+
+Published 2025-10-24
+
+Licensed CC-BY-4.0
+
+
+
+The material supports the panel discussion about open data sharing with stories and info from the panelists.
+ 
+C.W. and R.M. are funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under the National Research Data Infrastructure –NFDI46/1 – 501864659
+
+[https://zenodo.org/records/17429285](https://zenodo.org/records/17429285)
+
+[https://doi.org/10.5281/zenodo.17429285](https://doi.org/10.5281/zenodo.17429285)
+
+
 ---
 
 ## Who you gonna call? - Data Stewards to the rescue
@@ -157,3 +178,22 @@ Tags: Exclude From Dalia
 
 ---
 
+## [RDM4Mic2025] Data stewardship for Bio-Image Research Data Management Support and Training in NFDI4BIOIMAGE
+
+Cornelia Wetzker, Vanessa Fuchs, Jens Wendt, Mohsen Ahmadi, Müller, Maximilian E., Riccardo Massei
+
+Published 2025-10-29
+
+Licensed CC-BY-4.0
+
+
+
+The consortium NFDI4BIOIMAGE is funded by DFG grant number NFDI 46/1, project number 501864659.
+
+[https://zenodo.org/records/17472821](https://zenodo.org/records/17472821)
+
+[https://doi.org/10.5281/zenodo.17472821](https://doi.org/10.5281/zenodo.17472821)
+
+
+---
+

_sources/authors/jens_wendt.md

@@ -1,4 +1,4 @@
-# Jens wendt (8)
+# Jens wendt (9)
 ## Excel template for adding Key-Value Pairs to images
 
 Thomas Zobel, Jens Wendt
@@ -177,3 +177,22 @@ Tags: Exclude From Dalia
 
 ---
 
+## [RDM4Mic2025] Data stewardship for Bio-Image Research Data Management Support and Training in NFDI4BIOIMAGE
+
+Cornelia Wetzker, Vanessa Fuchs, Jens Wendt, Mohsen Ahmadi, Müller, Maximilian E., Riccardo Massei
+
+Published 2025-10-29
+
+Licensed CC-BY-4.0
+
+
+
+The consortium NFDI4BIOIMAGE is funded by DFG grant number NFDI 46/1, project number 501864659.
+
+[https://zenodo.org/records/17472821](https://zenodo.org/records/17472821)
+
+[https://doi.org/10.5281/zenodo.17472821](https://doi.org/10.5281/zenodo.17472821)
+
+
+---
+

_sources/authors/josh_moore.md

@@ -1,4 +1,4 @@
-# Josh moore (41)
+# Josh moore (42)
 ## A Cloud-Optimized Storage for Interactive Access of Large Arrays
 
 Josh Moore, Susanne Kunis
@@ -328,6 +328,26 @@ Content type: Publication
 [https://f1000research.com/articles/11-638](https://f1000research.com/articles/11-638)
 
 
+---
+
+## Road to OME-Zarr 1.0
+
+Josh Moore
+
+Published 2025-11-10
+
+Licensed CC-BY-4.0
+
+
+
+Presented at the 2025 International OME-NGFF workshop.
+https://www.biovisioncenter.uzh.ch/en/events/Upcoming-Events/2025-OME-NGFF-workshop.html
+
+[https://zenodo.org/records/17579804](https://zenodo.org/records/17579804)
+
+[https://doi.org/10.5281/zenodo.17579804](https://doi.org/10.5281/zenodo.17579804)
+
+
 ---
 
 ## SpatialData: an open and universal data framework for spatial omics

_sources/authors/mohsen_ahmadi.md

@@ -1,4 +1,4 @@
-# Mohsen ahmadi (4)
+# Mohsen ahmadi (5)
 ## Bioimaging workflow based on OMERO, eLabFTW, and Adamant for integrating images with multimodal metadata
 
 Mohsen Ahmadi, Robert Wagner, Sander Bekeschus, Becker, Markus M.
@@ -83,3 +83,22 @@ Tags: Exclude From Dalia
 
 ---
 
+## [RDM4Mic2025] Data stewardship for Bio-Image Research Data Management Support and Training in NFDI4BIOIMAGE
+
+Cornelia Wetzker, Vanessa Fuchs, Jens Wendt, Mohsen Ahmadi, Müller, Maximilian E., Riccardo Massei
+
+Published 2025-10-29
+
+Licensed CC-BY-4.0
+
+
+
+The consortium NFDI4BIOIMAGE is funded by DFG grant number NFDI 46/1, project number 501864659.
+
+[https://zenodo.org/records/17472821](https://zenodo.org/records/17472821)
+
+[https://doi.org/10.5281/zenodo.17472821](https://doi.org/10.5281/zenodo.17472821)
+
+
+---
+

_sources/authors/riccardo_massei.md

@@ -1,4 +1,4 @@
-# Riccardo massei (17)
+# Riccardo massei (19)
 ## Advancing FAIR Image Analysis in Galaxy: Tools, Workflows, and Training
 
 Chiang Jurado, Diana, Riccardo Massei, Pavankumar Videm, Anup Kumar, Anne Fouilloux, Leonid Kostrykin, Beatriz Serrano-Solano, Björn Grüning
@@ -267,6 +267,27 @@ Content type: Tutorial, Framework, Workflow
 [https://training.galaxyproject.org/training-material/topics/imaging/tutorials/omero-suite/tutorial.html](https://training.galaxyproject.org/training-material/topics/imaging/tutorials/omero-suite/tutorial.html)
 
 
+---
+
+## The Power of Sharing: Open Data in Bio-image Analysis
+
+Frauke Beyer, Michaela Unger, Ronny Gey, Riccardo Massei, Cornelia Wetzker, Elena Nicolay, Lampert, Mara Harriet
+
+Published 2025-10-24
+
+Licensed CC-BY-4.0
+
+
+
+The material supports the panel discussion about open data sharing with stories and info from the panelists.
+ 
+C.W. and R.M. are funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under the National Research Data Infrastructure –NFDI46/1 – 501864659
+
+[https://zenodo.org/records/17429285](https://zenodo.org/records/17429285)
+
+[https://doi.org/10.5281/zenodo.17429285](https://doi.org/10.5281/zenodo.17429285)
+
+
 ---
 
 ## The role of Helmholtz Centers in NFDI4BIOIMAGE - A national consortium enhancing FAIR data management for microscopy and bioimage analysis
@@ -330,6 +351,25 @@ Content type: Github Repository, Slides
 [https://github.com/rmassei/ymia_python_event_series_material](https://github.com/rmassei/ymia_python_event_series_material)
 
 
+---
+
+## [RDM4Mic2025] Data stewardship for Bio-Image Research Data Management Support and Training in NFDI4BIOIMAGE
+
+Cornelia Wetzker, Vanessa Fuchs, Jens Wendt, Mohsen Ahmadi, Müller, Maximilian E., Riccardo Massei
+
+Published 2025-10-29
+
+Licensed CC-BY-4.0
+
+
+
+The consortium NFDI4BIOIMAGE is funded by DFG grant number NFDI 46/1, project number 501864659.
+
+[https://zenodo.org/records/17472821](https://zenodo.org/records/17472821)
+
+[https://doi.org/10.5281/zenodo.17472821](https://doi.org/10.5281/zenodo.17472821)
+
+
 ---
 
 ## [Workshop] Bioimage data management and analysis with OMERO

_sources/authors/robert_haase.md

@@ -1,4 +1,4 @@
-# Robert haase (67)
+# Robert haase (68)
 ## A Hitchhiker's guide through the bio-image analysis software universe
 
 Robert Haase, Elnaz Fazeli, David Legland, Michael Doube, Siân Culley, Ilya Belevich, Eija Jokitalo, Martin Schorb, Anna Klemm, Christian Tischer
@@ -1214,6 +1214,27 @@ Content type: Blog Post
 [https://focalplane.biologists.com/2023/02/15/sharing-research-data-with-zenodo/](https://focalplane.biologists.com/2023/02/15/sharing-research-data-with-zenodo/)
 
 
+---
+
+## Smart Slide Generation: Re-Using Training Materials Through the Power of LLMs
+
+Lea Kabjesz, Lea Gihlein, Lampert, Mara Harriet, Robert Haase
+
+Published 2025-11-06
+
+Licensed CC-BY-4.0
+
+
+
+This record contains the poster "Smart Slide Generation: Re-Using Training Materials Through the Power of LLMs" presented by Lea Kabjesz and Lea Gihlein at the All Hands Meeting of the German AI Centers, held on 5th - 6th November 2025 at DFKI Saarbrücken, Germany. 
+ 
+We acknowledge funding by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under the National Research Data Infrastructure – NFDI 46/1 – 501864659.
+
+[https://zenodo.org/records/17541532](https://zenodo.org/records/17541532)
+
+[https://doi.org/10.5281/zenodo.17541532](https://doi.org/10.5281/zenodo.17541532)
+
+
 ---
 
 ## Stackview sliceplot example data

_sources/authors/susanne_kunis.md

@@ -1,4 +1,23 @@
-# Susanne kunis (18)
+# Susanne kunis (19)
+## (Meta)data in Action - Developments in NFDI4BIOIMAGE and I3D:bio
+
+Susanne Kunis
+
+Published 2025-10-23
+
+Licensed CC-BY-4.0
+
+
+
+This presentation gives a short overview of the outcome of the I3D:bio project and the ongoing developments in terms of data and metadata in the NFDI4BIOIMAGE consortium. Presented at the RDM4mic meeting in Münster, from Okt. 21-23, 2025
+
+[https://zenodo.org/records/17424911](https://zenodo.org/records/17424911)
+
+[https://doi.org/10.5281/zenodo.17424911](https://doi.org/10.5281/zenodo.17424911)
+
+
+---
+
 ## A Cloud-Optimized Storage for Interactive Access of Large Arrays
 
 Josh Moore, Susanne Kunis

_sources/authors/thomas_zobel.md

@@ -1,4 +1,4 @@
-# Thomas zobel (8)
+# Thomas zobel (9)
 ## Excel template for adding Key-Value Pairs to images
 
 Thomas Zobel, Jens Wendt
@@ -40,6 +40,25 @@ Content type: Collection
 [https://zenodo.org/doi/10.5281/zenodo.8139353](https://zenodo.org/doi/10.5281/zenodo.8139353)
 
 
+---
+
+## Howto organize your image data in OMERO
+
+Thomas Zobel, Carsten Fortmann-Grote
+
+Published 2025-10-21
+
+Licensed CC-BY-4.0
+
+
+
+Material for the OMERO Training Workshop at MPI Evolutionary Biology, Dec. 7 & 8 2023
+
+[https://zenodo.org/records/17404133](https://zenodo.org/records/17404133)
+
+[https://doi.org/10.5281/zenodo.17404133](https://doi.org/10.5281/zenodo.17404133)
+
+
 ---
 
 ## I3D:bio's OMERO training material: Re-usable, adjustable, multi-purpose slides for local user training