@@ -26916,3 +26916,77 @@ resources:
2691626916 - Daniel Olvera Cabrera https://orcid.org/0000-0002-7935-9715
2691726917 - Andra Waagmeester https://orcid.org/0000-0001-9773-4008
2691826918 file_formats: .org * .pdf * .tex
26919+ - authors:
26920+ - Dutta, Suchetana Bias
26921+ - Valerio-Cabrera, Sarai
26922+ description: A Python-based stitching script for individual tiles obtained with
26923+ an automated imaging platform that combines the Vertebrate Automated Screening
26924+ Technology (VAST) BioImager system (Union Biometrica), the Large Particle (LP)
26925+ Sampler (Union Biometrica), and the Zeiss Cell Observer Spinning Disk Confocal
26926+ Microscopic System (SDCM) (Early et al., 2018). The Lyons Lab (https://www.lyons-lab.com/)
26927+ designed the system as a screening tool for automated, high-resolution, in vivo
26928+ imaging of 2–5-day-old zebrafish larvae. Two datasets are available to test
26929+ the script, along with the final stitched files for comparison.
26930+ license: cc-by-4.0
26931+ name: Workflow and Example Dataset for Python-Based Stitching of Confocal Zebrafish
26932+ Images from VAST BioImager-Based Screening
26933+ num_downloads: 11
26934+ publication_date: '2026-02-28'
26935+ submission_date: '2026-04-21T12:03:11.483451'
26936+ url:
26937+ - https://zenodo.org/records/18712011
26938+ - https://doi.org/10.5281/zenodo.18712011
26939+ - authors:
26940+ - Bortolomeazzi, Michele
26941+ - Schmidt, Christian
26942+ description: OMERO has been established as a valuable, community-tested platform
26943+ to facilitate research data management with bioimaging data. It allows the central,
26944+ secure storage of original image files, collaborative access and analysis, metadata
26945+ curation, and figure creation directly from the original data. However, deploying
26946+ OMERO as a solution for laboratories, departments, or whole institutes requires
26947+ a coordinated multi-stakeholder process. Consequently, researchers who would like
26948+ to use OMERO as their RDM solution may be overwhelmed by the effort that an OMERO
26949+ implementation demands. On the basis of the „Information Infrastructure
26950+ for BioImage Data“ (I3D:bio) project, and the NFDI4BIOIMAGE consortium,
26951+ we have developed structured processes and installation management approaches
26952+ to realize institutional OMERO instances as a resource for all researchers. In
26953+ this workshop, we share hands-on experience for the initiation and steering the
26954+ OMERO implementation process. This workshop is directed primarily at research
26955+ support facility staff and leaders, senior researchers, and project managers in
26956+ the field of bioimaging-data-driven research fields.
26957+ license: cc-by-4.0
26958+ name: Process management for the institutional deployment of OMERO as an image data
26959+ RDM platform
26960+ num_downloads: 0
26961+ publication_date: '2026-04-17'
26962+ submission_date: '2026-04-21T12:03:12.289383'
26963+ url:
26964+ - https://zenodo.org/records/19627003
26965+ - https://doi.org/10.5281/zenodo.19627003
26966+ - authors:
26967+ - Corbat, Agustin Andres
26968+ - Walther, Christa G.
26969+ - de la Ballina, Laura R.
26970+ - Condon, Nicholas David
26971+ - Felder, Alessandro A.
26972+ - "Sch\xE4tz, Martin"
26973+ - Schmerl, Bettina
26974+ - Sugawara, Ko
26975+ - Prats, Clara
26976+ - Klemm, Anna
26977+ - Levet, Florian
26978+ - Miura, Kota
26979+ - Sampaio, Paula
26980+ - Tischer, Christian
26981+ - D'Antuono, Rocco
26982+ - Cimini, Beth A.
26983+ - Haase, Robert
26984+ description: GloBIAS figure (available in .ai, .pdf and .png formats).
26985+ license: cc-by-4.0
26986+ name: GloBIAS mission and working groups figure
26987+ num_downloads: 0
26988+ publication_date: '2026-04-17'
26989+ submission_date: '2026-04-21T12:05:00.806866'
26990+ url:
26991+ - https://zenodo.org/records/19631650
26992+ - https://doi.org/10.5281/zenodo.19631650
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