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Merge pull request #777 from NFDI4BIOIMAGE/git-bob-mod-tWquuDdZrJ
Add content from communities: nfdi4bioimage, gerbi, euro-bioimaging, neubias, bio-formats, globias, rdm4mic
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resources/nfdi4bioimage.yml

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@@ -14512,4 +14512,85 @@ resources:
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url:
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- https://zenodo.org/records/14996127
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- https://doi.org/10.5281/zenodo.14996127
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- authors:
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- Moore, Josh
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- Sun, Yi
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description: 'Slides for the NFDI Tech Talk live streamed to https://www.youtube.com/live/bzfmE29S270
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See http://nfdi.de/talks for more information.'
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license: cc-by-4.0
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name: '[NFDI Tech Talk] Cloud Based Image Science'
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num_downloads: 24
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publication_date: '2025-06-02'
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submission_date: '2025-06-03T11:21:25.871337'
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url:
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- https://zenodo.org/records/15575379
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- https://doi.org/10.5281/zenodo.15575379
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- authors:
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- Schmidt, Christian
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- Mathur, Aastha
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- Moore, Josh
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description: 'Presented at ELMI2025
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https://www.embl.org/about/info/course-and-conference-office/events/elmi2025/'
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license: cc-by-4.0
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name: '[ELMI2025] Bridging communities with OME-Zarr'
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num_downloads: 42
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publication_date: '2025-06-04'
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submission_date: '2025-06-03T11:21:26.272302'
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url:
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- https://zenodo.org/records/15393592
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- https://doi.org/10.5281/zenodo.15393592
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- authors:
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- Moore, Josh
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description: 'https://www.ebi.ac.uk/training/events/towards-open-and-standardised-imaging-data-introduction-bio-formats-ome-tiff-and-ome-zarr/
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Microscopy and bioimaging technologies are fundamental tools for exploring biological
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systems, generating large, multidimensional datasets rich in experimental detail.
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However, the bioimaging community has historically faced major challenges around
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data handling: vendor-specific proprietary formats, fragmented metadata storage,
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and increasingly large dataset sizes that outstrip traditional storage and computing
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solutions.
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In this webinar, key open technologies developed by the Open Microscopy Environment
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(OME) to address these challenges were presented. Specifically, the Bio-Formats
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library for accessing diverse proprietary file formats, the OME-TIFF standard
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for archival data storage, and the OME-Zarr format for cloud-native, scalable
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bioimaging workflows were presented.'
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license: cc-by-4.0
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name: 'Towards open and standardised imaging data: an introduction to Bio-Formats,
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OME-TIFF, and OME-Zarr'
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num_downloads: 264
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publication_date: '2025-05-28'
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submission_date: '2025-06-03T11:21:26.733860'
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url:
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- https://zenodo.org/records/15479606
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- https://doi.org/10.5281/zenodo.15479606
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- authors:
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- Bustos, Jonatan
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description: This dataset contains 4 .nd2 image files of pollen grains captured
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using a Nikon 80i microscope. The files include both the original full-frame images
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and cropped Regions of Interest (ROIs) extracted from them. All images are in
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RGB format and include multiple Z-stack layers.
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license: cc-by-4.0
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name: Nd2 does not open in Fiji Bio_formats 8.1.1 (additional files)
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num_downloads: 11
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publication_date: '2025-05-23'
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submission_date: '2025-06-03T11:22:08.077083'
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url:
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- https://zenodo.org/records/15493140
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- https://doi.org/10.5281/zenodo.15493140
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- authors:
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- Carlos, Jaramillo
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description: this file is a .nd2 image of a pollen grain taken with a Nikon 80i. 
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It is in RGB and it is a stack of hundreds of Z layers
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license: cc-by-4.0
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name: Nd2 does not open in Fiji Bio_formats 8.1.1
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num_downloads: 1
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publication_date: '2025-06-02'
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submission_date: '2025-06-03T11:22:15.103885'
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url:
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- https://zenodo.org/records/15579371
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- https://doi.org/10.5281/zenodo.15579371

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