Add UUIDs to yml

[haesleinhuepf]

In our file resources/nfdi4bioimage.yml we have a structure like this:

resources
- author: person A
- author: person B

We need a python script that attaches a new uuid version 4 to all records under resources, that does not have a uuid yet. After saving the yml file, it should send a pull-request to this repository using the functions provided in scripts/_github_utilities.py.

git-bob comment on how to achieve this

[github-actions]

^{This message was generated by git-bob (version: 0.27.2, model: github_models:gpt-4o, log), an experimental AI-based assistant. It can make mistakes and has limitations. Check its messages carefully.}

To achieve the functionality described in the issue, you could write a script like the following example:

import uuid
import yaml
from scripts._github_utilities import (
    create_branch,
    get_file_in_repository,
    write_file,
    send_pull_request,
)

def add_uuids_to_resources_yml(repository, file_path="resources/nfdi4bioimage.yml", parent_branch="main", issue_number=None):
    # Load the file content from the repository
    branch_name = create_branch(repository, parent_branch=parent_branch)
    content_file = get_file_in_repository(repository, parent_branch, file_path)
    content = yaml.safe_load(content_file.decoded_content)

    # Add UUIDs to records under 'resources' if not present
    for resource in content.get("resources", []):
        if "uuid" not in resource:
            resource["uuid"] = str(uuid.uuid4())

    # Save changes back to a branch
    updated_content = yaml.dump(content, sort_keys=False)
    write_file(repository, branch_name, file_path, updated_content, commit_message="Add missing UUIDs to resources")

    # Send a pull request
    pr_title = "Add missing UUIDs to resources"
    pr_description = f"Adds missing UUIDs to resources in the {file_path}. Closes #{issue_number}" if issue_number else pr_title
    send_pull_request(repository, branch_name, pr_title, pr_description)

This script modifies the YAML file by adding missing UUIDs to records under resources, creates a branch from the main branch, commits the updated file, and sends a pull request to the repository.

Let me know if further refinements are needed!

[haesleinhuepf]

git-bob implement this as a new script under scripts/