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Merge pull request #11 from NL-BioImaging/dev-register2 #12

Merge pull request #11 from NL-BioImaging/dev-register2

Merge pull request #11 from NL-BioImaging/dev-register2 #12

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
name: Python package
on:
push:
pull_request:
branches: [ "master" ]
jobs:
build:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.12"] # Match requires-python >=3.12
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install flake8 pytest pytest-cov
# Install ZeroC Ice from Glencoe prebuilt binaries
python -m pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp312-cp312-manylinux_2_28_x86_64.whl
python -m pip install --editable .[test]
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=79 --statistics
- name: Test with pytest
run: |
python -m pytest tests/unittests/ --cov=biomero_importer --cov-report=term-missing -v