refactor metadata suggestion diff auto-commment on PR #81
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| name: AutocompleteMetadata | ||
| on: | ||
| pull_request_target: | ||
| paths: | ||
| - 'Molecules/membrane/**/metadata.yaml' | ||
| - 'Molecules/solution/**/metadata.yaml' | ||
| permissions: | ||
| contents: read | ||
| pull-requests: write | ||
| jobs: | ||
| add-metadata: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout BilayerData | ||
| uses: actions/checkout@v6 | ||
| with: | ||
| repository: ${{ github.event.pull_request.head.repo.full_name }} | ||
| ref: ${{ github.event.pull_request.head.ref }} | ||
| persist-credentials: false | ||
| - name: Clone Databank and install | ||
| run: | | ||
| git clone --depth 1 https://github.com/NMRlipids/FAIRMD_lipids.git "$RUNNER_TEMP/Databank" | ||
| pip install "$RUNNER_TEMP/Databank" | ||
| - name: Install the gh cli | ||
| uses: ksivamuthu/actions-setup-gh-cli@v3 | ||
| with: | ||
| version: 2.83.0 | ||
| - name: Find changed metadata.yaml files | ||
| id: files | ||
| env: | ||
| GH_TOKEN: ${{ github.token }} | ||
| run: | | ||
| changed_files=$(gh api --paginate \ | ||
| "repos/${{ github.repository }}/pulls/${{ github.event.pull_request.number }}/files" \ | ||
| --jq '.[] | select(.status != "removed") | .filename' \ | ||
| | grep -E '^Molecules/(membrane|solution)/[^/]+/metadata\.yaml$' || true) | ||
| { | ||
| echo "changed_files<<EOF" | ||
| echo "$changed_files" | ||
| echo "EOF" | ||
| } >> "$GITHUB_OUTPUT" | ||
| echo "Changed files:" | ||
| echo "$changed_files" | ||
| - name: Run AddMetadata.py and create suggestions | ||
| if: steps.files.outputs.changed_files != '' | ||
| env: | ||
| CHANGED_FILES: ${{ steps.files.outputs.changed_files }} | ||
| run: | | ||
| printf '%s\n' "$CHANGED_FILES" | while IFS= read -r f; do | ||
| [ -n "$f" ] && python "$RUNNER_TEMP/Databank/developer/autocomplete_metadata.py" "$f" | ||
| done | ||
| - name: Suggest changes on PR | ||
| if: steps.files.outputs.changed_files != '' | ||
| env: | ||
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| run: | | ||
| diff=$(git diff) | ||
| if [ -n "$diff" ]; then | ||
| gh pr comment ${{ github.event.pull_request.number }} \ | ||
| --repo ${{ github.repository }} \ | ||
| --body "**Metadata autocomplete suggestions:** | ||
| \`\`\`diff | ||
| $diff | ||
| \`\`\`" | ||
| fi | ||
