Global simulation analysis after simulation addition #93

	name: Validate Readme Files

	on:
	pull_request:
	paths: 'Simulations/**/README.yaml'

	permissions:
	contents: read
	pull-requests: write

	jobs:
	Check-Readme:
	if: github.repository == 'NMRLipids/BilayerData'
	runs-on: ubuntu-latest
	env:
	FMDL_DATA_PATH: ${{ github.workspace }}/BilayerData

	steps:
	- name: Checkout BilayerData
	uses: actions/checkout@v7
	with:
	repository: ${{ github.event.pull_request.head.repo.full_name }}
	ref: ${{ github.event.pull_request.head.ref }}
	path: BilayerData
	persist-credentials: false

	- name: Install the gh cli
	uses: ksivamuthu/actions-setup-gh-cli@v3
	with:
	version: 2.83.0

	- name: Install FAIRMD_lipids dependencies
	run: \|
	pip install git+https://github.com/NMRLipids/FAIRMD_lipids.git

	- name: Validate all README.yaml files
	working-directory: BilayerData
	shell: bash --noprofile --norc {0}
	run: \|
	set +e
	mapfile -d '' -t files < <(find Simulations -name README.yaml -print0)
	out="$(
	python -m fairmd.lipids.schema_validation.validate_yaml \
	--schema readme \
	"${files[@]}" 2>&1
	)"
	status=$?

	errors=""

	while IFS= read -r line; do
	case "$line" in
	ERROR:*)
	echo "::error::$line"
	errors+="$line"$'\n'
	;;
	esac
	done <<< "$out"

	echo "::group::Full output"
	echo $out
	echo "::endgroup::"

	[ -n "$errors" ] \|\| errors="None"

	{
	echo "## README.yaml validation"
	echo
	echo "Errors:"
	echo
	echo '```text'
	printf '%s' "$errors"
	echo
	echo '```'
	} >> "$GITHUB_STEP_SUMMARY"

	exit $status

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